Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01173 ATGCCAATTCTTTGGTTCTTATTACTCTCCCACATGACAACAACTTCCATTTCATTACACACTTTAGCAGTGAACCAAACGATCCGAGATGGTGGTGGTGAGAGTTTAGTTTCAGTAAGTGGGATCACTGAATTCGGTTTCTTCAGCCCCGGGAGTTCAAAAGGTCGATATTTGGGTGTATGGTACAGGAATGTAACCCCTTTAACAGTCATATGGGTGGCCAATAGAGAAACACCACTAAAAAACCATTTAGGAGTGTTAAAGCTCAATGCAAACGGGATTTTTCAGCTTCGCAACGGCCCTGCTAACAGCGCTATAATTTGGTCATCCAATACAACTACAATAAGAAAAGCAGGGAATCTGAATAATCCTATAGCTCAGCTCCTGGATTCAGGAAATTTGGTAGTGAAAAATGGAGAGCAAACTGATGAATTTTTGTGGCAGAGTTTTGATTATCCCTCTGATACATTGATGTCCGGAATGAAACTTGGATGGAACTTAGAAATTGGTCTAGAAAGATCCACATCATCATGGAAAAGTGATGATGACCCTGCTGAGGGAGAATATGCTATGAAACTTGACCTTAGAGGATATCCTCAGATAATTATATTCAAAGGATCTGATATATATAATAGACCAGGGCCATGGCTCGGCGAGTTCATTGCTGGATCTCAAGAACCAACTCCGGGAGCGGAGCAGAGATTTGTGTTCAATGAAAAAGAAGTGTATTATGAATACGAGAGTAATGAAAGCTCAACTATCGCGTTAACTAAACTGGCTCCTTCAGGTGCTGAGCAGATTCTGTATTGGGTTGTTGGAACGGGCAAAAGGCTAGTGTACTCAGATGGGAAGGATGAATGCGAAGACTACGCCTATTGTGGTACAAATTCTATATGCAGCATGGATGGTAGCCTTCCAAATTGTGAGTGTTTGAAAGGGTATGTTCCGAAAATTCCTCAACAGTGGGAGCTGTCTCACTGGAAAGACGGTTGTGTTCCGAGGAATGAATCTAATTGCAAAAGCAGTACAGAGGGGTTCTTCAAGTACACACACATGAAGTATCCAGATACATCTTCATCATGGTTTGATAAGAGCACGAACCTCGTGGAATGTAAGGCGATGTGTCTCAGAAACTGTTCCTGTGTAGCCTATGCTAATTTAGATACCCGCAATGGCGGAACTGGGTGTCTTCTTTGGTTTAATTATCTGGTTGATGTGAGAGAATTCACTAAATGGGGACAAGATATTTATGTCAAAGTCCCTCTTTCAGAACTAGATGTAGATAACCATGGAAACATCAAGAAGATAGTCGGAATCACAGTTGCTGTGATTATTATTATTGGATTAATTACATGTGGATCGATATGTATGATTAAAAATCGTCCAGGGGCTGCAAGAAATACTTTCAGTTTCAACAAGCGTTACGAAAGAAACCTAAGGAAGGAAGAAGATGTTGACCTGACAACATTCGATTTCTCTGTCTTGGCTTATGCCACTAACAACTTTTCAAGCAGTAACAAACTTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGAATGTTGATAGATGGACAAGAGATAGCTGTGAAAAGACTTTCGAAAAGATCTGGACAAGGCTTGAAAGAATTTAAAAATGAAGTGGCACTGATTGCAAAACTTCAGCACCGTAATCTCATAAAGCTTCTTGGCTGTTGTATTCAAGGAGAAGAAACAATGTTGATCTATGAATACATGCCGAACAAAAGCTTGGACTATTTTGTTTTTGATGACACCAAAACGATGTCACTGGATTGGGTTAGGCGTTTCAATATTATTGGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGAGTGAGGATTATTCACAGAGATCTAAAAACTAGCAATATATTACTAGACATAAATTTGGAGCCGAAAATATCAGACTTTGGCTTGGCTCGAATCTTTTTGGGGGACCAAATCGAGGAAAACACAAATAGAGTGGCTGGAACTTATGGCTACATATCTCCAGAGTATGCTGTCCATGGGCATTTCTCAGCGAAATCAGATGTATTTAGTTATGGTGTGATTGTACTAGAGATTGTAAGTGGGAAAAGGAATAGGGGATTTTCAAACCTCGAACAGTGCAATAATCTTCTTGGATATGCATGGAGATTATGGTCGGAAGAGAGAGCCCTGGAACTATTGGATGAAGTGTTACGGGAACAATATACAGCATTTGAAGTCATACGAAGTATACAGGTGGGCTTGTTATGTGTGCAACAAAGCCCAGAAGATAGACCAGACATGTCATCTGTGGTTCTAATGCTAAATGGTCAGAAAATATTGCCAGAGCCAACGTTTCCTGGCTTTTACGCGGAAAAAGATTTACGTACCGAATCAGGTTCTTCACTTGCAACTCACAAATTCTGCTCAACTAATGAAATATCCATTACAGAGTTAGATGCGAGATAG 2463 0.404 MPILWFLLLSHMTTTSISLHTLAVNQTIRDGGGESLVSVSGITEFGFFSPGSSKGRYLGVWYRNVTPLTVIWVANRETPLKNHLGVLKLNANGIFQLRNGPANSAIIWSSNTTTIRKAGNLNNPIAQLLDSGNLVVKNGEQTDEFLWQSFDYPSDTLMSGMKLGWNLEIGLERSTSSWKSDDDPAEGEYAMKLDLRGYPQIIIFKGSDIYNRPGPWLGEFIAGSQEPTPGAEQRFVFNEKEVYYEYESNESSTIALTKLAPSGAEQILYWVVGTGKRLVYSDGKDECEDYAYCGTNSICSMDGSLPNCECLKGYVPKIPQQWELSHWKDGCVPRNESNCKSSTEGFFKYTHMKYPDTSSSWFDKSTNLVECKAMCLRNCSCVAYANLDTRNGGTGCLLWFNYLVDVREFTKWGQDIYVKVPLSELDVDNHGNIKKIVGITVAVIIIIGLITCGSICMIKNRPGAARNTFSFNKRYERNLRKEEDVDLTTFDFSVLAYATNNFSSSNKLGEGGFGPVYKGMLIDGQEIAVKRLSKRSGQGLKEFKNEVALIAKLQHRNLIKLLGCCIQGEETMLIYEYMPNKSLDYFVFDDTKTMSLDWVRRFNIIGGIARGLLYLHQDSRVRIIHRDLKTSNILLDINLEPKISDFGLARIFLGDQIEENTNRVAGTYGYISPEYAVHGHFSAKSDVFSYGVIVLEIVSGKRNRGFSNLEQCNNLLGYAWRLWSEERALELLDEVLREQYTAFEVIRSIQVGLLCVQQSPEDRPDMSSVVLMLNGQKILPEPTFPGFYAEKDLRTESGSSLATHKFCSTNEISITELDAR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01173 820 SUPERFAMILY Protein kinase-like (PK-like) 485 781 IPR011009 -
Trre1g01173 820 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Trre1g01173 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 184 IPR036426 -
Trre1g01173 820 Gene3D Phosphorylase Kinase; domain 1 476 577 - -
Trre1g01173 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 781 - -
Trre1g01173 820 ProSiteProfiles Protein kinase domain profile. 502 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01173 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 420 - -
Trre1g01173 820 Gene3D - 15 150 IPR036426 -
Trre1g01173 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 150 - -
Trre1g01173 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Trre1g01173 820 Pfam D-mannose binding lectin 69 179 IPR001480 -
Trre1g01173 820 ProSiteProfiles PAN/Apple domain profile. 339 421 IPR003609 -
Trre1g01173 820 Pfam PAN-like domain 339 406 IPR003609 -
Trre1g01173 820 CDD B_lectin 31 153 IPR001480 -
Trre1g01173 820 ProSiteProfiles Bulb-type lectin domain profile. 21 149 IPR001480 -
Trre1g01173 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Trre1g01173 820 SMART ntp_6 341 420 IPR003609 -
Trre1g01173 820 ProSiteProfiles EGF-like domain profile. 283 320 IPR000742 -
Trre1g01173 820 CDD STKc_IRAK 508 775 - -
Trre1g01173 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 764 - -
Trre1g01173 820 Pfam Protein tyrosine and serine/threonine kinase 505 771 IPR001245 GO:0004672|GO:0006468
Trre1g01173 820 CDD PAN_AP_plant 337 421 - -
Trre1g01173 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 466 577 - -
Trre1g01173 820 SMART blect_4 27 153 IPR001480 -
Trre1g01173 820 Gene3D Hepatocyte Growth Factor 337 418 - -
Trre1g01173 820 Pfam S-locus glycoprotein domain 212 317 IPR000858 GO:0048544
Trre1g01173 820 SMART serkin_6 502 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01173 Trre-Chr1 8917344 8920479 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01173 436 788 Receptor kinase-like Gene Family AT4G23190 53.315 2.01e-129 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g01173 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01173 - - gmx:100815430 1062.75