Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01172 ATGCCAATTCTTTGGTTCTTATTACTCTCCCACATGACAACAACTTCCATTTCATTACACACTTTAGCAGTGAACCAAACGATCCGAGATGGTGGTGGTGAGAGTTTAGTTTCAGTAAGTGGGATCACTGAATTCGGTTTCTTCAGCCCCGGGAGTTCAAAAGGTCGATATTTGGGTGTATGGTACAGGAATGTAACCCCTTTAACAGTCATATGGGTGGCCAATAGAGAAACACCACTAAAAAACCATTTAGGAGTGTTAAAGCTCAATGCAAACGGGATTTTTCAGCTTCGCAACGGCCCTGCTAACAGCGCTATAATTTGGTCATCCAATACAACTACAATAAGAAAAGCAGGGAATCTGAATAATCCTATAGCTCAGCTCCTGGATTCAGGAAATTTGGTAGTGAAAAATGGAGAGCAAACTGATGAATTTTTGTGGCAGAGTTTTGATTATCCCTCTGATACATTGATGTCCGGAATGAAACTTGGATGGAACTTAGAAATTGGTCTAGAAAGATCCACATCATCATGGAAAAGTGATGATGACCCTGCTGAGGGAGAATATGCTATGAAACTTGACCTTAGAGGATATCCTCAGATAATTATATTCAAAGGATCTGATATATATAATAGACCAGGGCCATGGCTCGGCGAGTTCATTGCTGGATCTCAAGAACCAACTCCGGGAGCGGAGCAGAGATTTGTGTTCAATGAAAAAGAAGTGTATTATGAATACGAGAGTAATGAAAGCTCAACTATCGCGTTAACTAAACTGGCTCCTTCAGGTGCTGAGCAGATTCTGTATTGGGTTGTTGGAACGGGCAAAAGGCTAGTGTACTCAGATGGGAAGGATGAATGCGAAGACTACGCCTATTGTGGTACAAATTCTATATGCAGCATGGATGGTAGCCTTCCAAATTGTGAGTGTTTGAAAGGGTATGTTCCGAAAATTCCTCAACAGTGGGAGCTGTCTCACTGGAAAGACGGTTGTGTTCCGAGGAATGAATCTAATTGCAAAAGCAGTACAGAGGGGTTCTTCAAGTACACACACATGAAGTATCCAGATACATCTTCATCATGGTTTGATAAGAGCACGAACCTCGTGGAATGTAAGGCGATGTGTCTCAGAAACTGTTCCTGTGTAGCCTATGCTAATTTAGATACCCGCAATGGCGGAACTGGGTGTCTTCTTTGGTTTAATTATCTGGTTGATGTGAGAGAATTCACTAAATGGGGACAAGATATTTATGTCAAAGTCCCTCTTTCAGAACTAGATGTAGATAACCATGGAAACATCAAGAAGATAGTCGGAATCACAGTTGCTGTGATTATTATTATTGGATTAATTACATGTGGATCGATATGTATGATTAAAAATCGTCCAGGGGCTGCAAGAAATACTTTCAGTTTCAACAAGCGTTACGAAAGAAACCTAAGGAAGGAAGAAGATGTTGACCTGACAACATTCGATTTCTCTGTCTTGGCTTATGCCACTAACAACTTTTCAAGCAGTAACAAACTTGGAGAAGGTGGTTTTGGACCAGTATACAAGGGAATGTTGATAGATGGACAAGAGATAGCTGTGAAAAGACTTTCGAAAAGATCTGGACAAGGCTTGAAAGAATTTAAAAATGAAGTGGCACTGATTGCAAAACTTCAGCACCATGACACCAAAACGATGTCACTGGATTGGGTTAGGCGTTTCAATATTATTGGTGGCATTGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGAGTGAGGATTATTCACAGAGATCTAAAAACTAGCAATATATTACTAGACATAAATTTGGAGCCGAAAATATCAGACTTTGGCTTGGCTCGAATCTTTTTGGGGGACCAAATCGAGGAAAACACAAATAGAGTGGCTGGAACTTATGGCTACATATCTCCAGAGTATGCTGTCCATGGGCATTTCTCAGCGAAATCAGATGTATTTAGTTATGGTGTGATTGTACTAGAGATTGTAAGTGGGAAAAGGAATAGGGGATTTTCAAACCTCGAACAGTGCAATAATCTTCTTGGATATGCATGGAGATTATGGTCGGAAGAGAGAGCCCTGGAACTATTGGATGAAGTGTTACGGGAACAATATACAGCATTTGAAGTCATACGAAGTATACAGGTGGGCTTGTTATGTGTGCAACAAAGCCCAGAAGATAGACCAGACATGTCATCTGTGGTTCTAATGCTAAATGGTCAGAAAATATTGCCAGAGCCAACGTTTCCTGGCTTTTACGCGGAAAAAGATTTACGTACCGAATCAGGTTCTTCACTTGCAACTCACAAATTCTGCTCAACTAATGAAATATCCATTACAGAGTTAGATGCGAGATAG 2364 0.4065 MPILWFLLLSHMTTTSISLHTLAVNQTIRDGGGESLVSVSGITEFGFFSPGSSKGRYLGVWYRNVTPLTVIWVANRETPLKNHLGVLKLNANGIFQLRNGPANSAIIWSSNTTTIRKAGNLNNPIAQLLDSGNLVVKNGEQTDEFLWQSFDYPSDTLMSGMKLGWNLEIGLERSTSSWKSDDDPAEGEYAMKLDLRGYPQIIIFKGSDIYNRPGPWLGEFIAGSQEPTPGAEQRFVFNEKEVYYEYESNESSTIALTKLAPSGAEQILYWVVGTGKRLVYSDGKDECEDYAYCGTNSICSMDGSLPNCECLKGYVPKIPQQWELSHWKDGCVPRNESNCKSSTEGFFKYTHMKYPDTSSSWFDKSTNLVECKAMCLRNCSCVAYANLDTRNGGTGCLLWFNYLVDVREFTKWGQDIYVKVPLSELDVDNHGNIKKIVGITVAVIIIIGLITCGSICMIKNRPGAARNTFSFNKRYERNLRKEEDVDLTTFDFSVLAYATNNFSSSNKLGEGGFGPVYKGMLIDGQEIAVKRLSKRSGQGLKEFKNEVALIAKLQHHDTKTMSLDWVRRFNIIGGIARGLLYLHQDSRVRIIHRDLKTSNILLDINLEPKISDFGLARIFLGDQIEENTNRVAGTYGYISPEYAVHGHFSAKSDVFSYGVIVLEIVSGKRNRGFSNLEQCNNLLGYAWRLWSEERALELLDEVLREQYTAFEVIRSIQVGLLCVQQSPEDRPDMSSVVLMLNGQKILPEPTFPGFYAEKDLRTESGSSLATHKFCSTNEISITELDAR 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01172 787 Pfam PAN-like domain 339 406 IPR003609 -
Trre1g01172 787 CDD B_lectin 31 153 IPR001480 -
Trre1g01172 787 Gene3D Hepatocyte Growth Factor 337 418 - -
Trre1g01172 787 Gene3D - 15 150 IPR036426 -
Trre1g01172 787 ProSiteProfiles Bulb-type lectin domain profile. 21 149 IPR001480 -
Trre1g01172 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 184 IPR036426 -
Trre1g01172 787 Pfam D-mannose binding lectin 69 179 IPR001480 -
Trre1g01172 787 SMART ntp_6 341 420 IPR003609 -
Trre1g01172 787 ProSiteProfiles EGF-like domain profile. 283 320 IPR000742 -
Trre1g01172 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 420 - -
Trre1g01172 787 ProSiteProfiles Protein kinase domain profile. 502 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01172 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 150 - -
Trre1g01172 787 Pfam S-locus glycoprotein domain 212 317 IPR000858 GO:0048544
Trre1g01172 787 SUPERFAMILY Protein kinase-like (PK-like) 485 748 IPR011009 -
Trre1g01172 787 SMART serkin_6 502 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01172 787 Gene3D Phosphorylase Kinase; domain 1 482 554 - -
Trre1g01172 787 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 548 748 - -
Trre1g01172 787 CDD PAN_AP_plant 337 421 - -
Trre1g01172 787 Gene3D Transferase(Phosphotransferase) domain 1 555 746 - -
Trre1g01172 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 590 602 IPR008271 GO:0004672|GO:0006468
Trre1g01172 787 PIRSF SRK 1 558 IPR024171 GO:0004674
Trre1g01172 787 PIRSF SRK 556 787 IPR024171 GO:0004674
Trre1g01172 787 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 731 - -
Trre1g01172 787 SMART blect_4 27 153 IPR001480 -
Trre1g01172 787 Pfam Protein kinase domain 570 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01172 787 ProSiteProfiles PAN/Apple domain profile. 339 421 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01172 Trre-Chr1 8917344 8920479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01172 436 755 Receptor kinase-like Gene Family AT4G23190 47.238 9.10e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre1g01172 Pkinase 6.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01172 - - gmx:100815430 984.556