Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01169 ATGTCATCCTTAACTCTTGCTATGGTGGTAGTGTTACTATTACTAATACTAATACTAATATTCCCTTGCAACAAATTGTATGGTGATGAACAACAAAATTCATGTTCACGAAGGTGCGGTGTACATAACATCAGCCACCCTTTTTGGCTGGTAGACAGTCCGAAAAAGTGTGGCCTACCAGCCAAAAAGGGTGGCGACAAAAGGTATATGTTATCATGCGAGGACAACAACCAATTGATTTTGTATGGATCATCTGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACCGTACGTCTATTGGATTTCAATCTTGGTGGTTACTCTATTTATTCCCTTCCTCCTCATTATTCTTTAGGACTTTATAATTTCAGTTCTGACATATACTCATCCTATCATTACACACACCATGTATTGTCGAAATCTATGTTATATGTCAGCTGTCCTAATAAGGTGCAATATTCCTCTGGTTATATATACGGTGCTAACTGTATGAATAGTAGTACTTTGTATTCACAATACGAAAATTCTTTCTATGTTGATGGCTATAACGAATATGAATCTCTGTCGGATTTGGGGCTGGGAGACGGGTGTCGTATAGAGTTTATGTATCTCACATCTCGGCCTCTTGAACATGGCAGTCATCGAGGCAACAACAACATTTCTTGTGAGGATATCCGTCGTACGATGTCTTATGGATTTGAACTTTCCTGGCTCAATAGTTTGTGTAAAGATGGTTGGACTGCATACTATATCGATAAAAATAACCAGCATATTTGTTTCCTTTTTTCAGAAACTTGGGGTTTATGGGAAGGCGTATCTATCTTGATTTACATAGGTACATTAGTTGGTATGTTTAGCGGTGTTAAATTTGTTCTTGGCGCGCCATGTATCGTTGTATTATTGATCTACAAATGGCGAAGAAAACATTTATCTATGTATGATGGTATCGAAGATTTCCTACGTAGTGATAATAGTATTATACCTATAAGATACTCTTACAAAGACATAAGAAAAATAACAGAACAATTCCAAACAAAACTAGGAAATGGAGGTTATGGATCTGTTTTTAAAGGAAAACTTCGAAGTGGTCGGCTTGTAGCAGTAAAATTATTGGACAAAGGCAAGTCAAACGGTCAAGATTTTATTAACGAAGTTGCTACCATTGGTAGGATTCACCATGTTAATGTGGTACAACTCATTGGTTTTTGTGTGGAGGGCTCAAAACGTGCTCTTATATATGAATTCATGCCAAATGGATCACTCGAAAAATACATATATTCACATACTGAAGAAGAATATTCCTTGAGTTGCGAAAAATTGCATGTCATTTCTATTGGAGTGGCGCGGGGCATTCAGTACTTGCATAATGGATGTAATATGAAAATCCTACACTTTGACATAAAGCCTCATAATATTCTTCTTGATGAGAATTTCAATCCTAAAGTATCTGATTTCGGGCTTGCGAGACTTTGTCCTACGGATAAAAGTATTGTGTCATTAACCGCAGCAAGAGGAACCATTGGATACATGGCCCCTGAACTGTTCTATAGAAATGTTGGCACAATATCTCACAAAGCTGATGTTTATAGCTTTGGGATGCTGTTAATGGAGATGGCAAGTAGAAGGAAGAACTTGAATGCTTTGGCCGAGCAATCTAGCAAAATTTATTTCCCATTTTGGATTTATGATCAGTTACATGATGGAAGGGAAGTAACAATTGAGAATGACACAGATAACGAAATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTATGGTGTATACAGACAAAACCTGAAGACCGTCCCTCAATGGATAAAGTGTTGGAGATGCTCGAAGAAGAAGACGGAGAATTGAAAATTCCTAATAAACCTTACTTTTGTCTACAAGATGAACCAGTATCGGAAGTTGGACATGATAATATTAACAACTCATCGACCTCCTAA 1956 0.3691 MSSLTLAMVVVLLLLILILIFPCNKLYGDEQQNSCSRRCGVHNISHPFWLVDSPKKCGLPAKKGGDKRYMLSCEDNNQLILYGSSGKYYVQSINYNNFTVRLLDFNLGGYSIYSLPPHYSLGLYNFSSDIYSSYHYTHHVLSKSMLYVSCPNKVQYSSGYIYGANCMNSSTLYSQYENSFYVDGYNEYESLSDLGLGDGCRIEFMYLTSRPLEHGSHRGNNNISCEDIRRTMSYGFELSWLNSLCKDGWTAYYIDKNNQHICFLFSETWGLWEGVSILIYIGTLVGMFSGVKFVLGAPCIVVLLIYKWRRKHLSMYDGIEDFLRSDNSIIPIRYSYKDIRKITEQFQTKLGNGGYGSVFKGKLRSGRLVAVKLLDKGKSNGQDFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIYSHTEEEYSLSCEKLHVISIGVARGIQYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGTISHKADVYSFGMLLMEMASRRKNLNALAEQSSKIYFPFWIYDQLHDGREVTIENDTDNEMKLAKKMMIVALWCIQTKPEDRPSMDKVLEMLEEEDGELKIPNKPYFCLQDEPVSEVGHDNINNSSTS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01169 651 SUPERFAMILY Protein kinase-like (PK-like) 326 616 IPR011009 -
Trre1g01169 651 SMART serkin_6 344 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01169 651 Gene3D Transferase(Phosphotransferase) domain 1 419 625 - -
Trre1g01169 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Trre1g01169 651 Pfam Protein kinase domain 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01169 651 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Trre1g01169 651 PANTHER RUST RESISTANCE KINASE LR10-RELATED 317 635 IPR045874 GO:0004672
Trre1g01169 651 Pfam Wall-associated receptor kinase galacturonan-binding 35 104 IPR025287 GO:0030247
Trre1g01169 651 ProSiteProfiles Protein kinase domain profile. 344 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01169 651 Gene3D Phosphorylase Kinase; domain 1 325 418 - -
Trre1g01169 651 FunFam PR5-like receptor kinase 419 626 - -
Trre1g01169 651 FunFam serine/threonine-protein kinase PBS1-like 318 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01169 Trre-Chr1 8897442 8899832 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01169 14 648 Receptor kinase-like Gene Family AT5G38260 35.725 9.34e-107 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01169 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01169 - - psat:127093935 756.518