Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01166 ATGCTACAAGAGGGAAAGTGTTGCTTAATCAAGATGATGGACACTTGTACTTATGTTATGGGATTGTTGTTAATTTTCATGGTTTACTATGTTGCTGGAACAACCACATCAGAGGTAATTAATTGTCCAGAAGATATATCATGTGGAAATCAAGTTATCAAATTCCCTTTCCAAATCAAAAACCAAAATCCAACTTCACCTATGTGTGGTGACTATCCAGGATTTGAGTTAATTTGTTCATCAAACCAAACAATGATTGAACTTCCTCACAAAGTGAAACTCAATGTCGAAAACATTGACTACACACGACAAACTATTCAACTATCCGATCCACAAAGTTGTCTTTACAAACATATCCAAAACCTCAATCTTTCAAAATCTCATTTCAATTACTTGGATGATCTTGTTGAGTATTACTTTTTCAATTGTTCACTTTCGGTTAGAGATGAGATGGACTCGTATTTTGTTCGATGCCTAAGTACCTCAGCCTCGCAAATTTATGCTATCCCCTCTTACCAAAAAATCAACTACCTTCCTCTTTACTCTTGCACCAAAATGTTTAATGTTTCATTAAACCCTTCTTATTCTGATTATGTTCCAAACATAAACCTTCTTCGTTTGATGTGGCTTACGCCTAATTGTAAAGAATGTGAATCAAAAGGAAAAAAATGTAGCTGGAAGAATAGCACTACTAATACCAACAAGGAACTATATTGTTGA 720 0.3444 MLQEGKCCLIKMMDTCTYVMGLLLIFMVYYVAGTTTSEVINCPEDISCGNQVIKFPFQIKNQNPTSPMCGDYPGFELICSSNQTMIELPHKVKLNVENIDYTRQTIQLSDPQSCLYKHIQNLNLSKSHFNYLDDLVEYYFFNCSLSVRDEMDSYFVRCLSTSASQIYAIPSYQKINYLPLYSCTKMFNVSLNPSYSDYVPNINLLRLMWLTPNCKECESKGKKCSWKNSTTNTNKELYC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01166 239 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 233 IPR046948 -
Trre1g01166 239 Pfam Wall-associated receptor kinase galacturonan-binding 42 110 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01166 Trre-Chr1 8886633 8887352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01166 52 232 C3H Transcription Factor Family AT2G25410 30.366 1.06e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01166 - - lja:Lj0g3v0257919.2 207.223