Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01162 ATGCCCTACCAAGTGTATGGTGATCAAGATATATCATTGGTGAAGTCAATATTATATGTAAGATGTCCGAATAGTGTCCAAAATTCTTCTGATATTTACTTTGATGAAGCACTTATCACTTGCATGAACATTACACATGAGAATTTGTTCTATGTCAACTATAGATTTGGATCCGATAAATCTCTTTCGAAATTGGATTTGGGAGATCTAGGAGACGGGTGTCGTGTAGAGTTTATGTATCTCACATCTTGGTCTCTGGAACATGGTGGTCGTCGTGGCAACAACAACATTTCTTGTTCGGACATCCGTCGTATGATGTTTTATGGATTTGAACTTTCTTGGTTCAACAGTCTCTGTAAAGATGGTTGGTATTGGTATCGATACCTCGATAAAAGTAGTCATCGTAGTTGTGCATCTATAGAAGAATGGAATATGCTGGAGATCATAGTCACATCTATCTTGATTTACATAGGTATATTACTTGGTTTGTTTAGTGGTGTTAAATTTGTTCTTGGAGCGCCATGTATCATTGTATTATTAATCTACAAATGGCGACGAAAACACTTATCAATGTATGATGGTATCGAAGATTTTCTACGTAGTGACAATTGTATTATGCCTATAAGATACTCTTACAAAGACATAAAAAAGATAACAGAACAATTCAAAACAAAACTAGGAAGTGGAGGTTATGGATCTGTTTATAAAGGAAAGCTTCGAAGTGGTCGACTTGTAGCAGTCAAATTATTGGACAAAGGCAAGTCAAACGGTCAAGATTTTGTTAACGAAGTTGCTACCATTGGAAGGATTCACCATGTTAATGTGGTACAACTCATTGGTTTTTGTGTGGAGGGCTCAAAACGTGCTCTTATATATGAATTCATGCCAAATGGCTCACTCGAAAAATACATATATTCACATACTGAAGAAAAATATTCCTTGAGTTGTGAAAAATTGTATGCAATTTCTCTTGGAGTGGCTCGAGGCATTGAGTACTTGCATAATGGATGTAATATGAAAATTCTACATTTTGACATAAAGCCTCATAATATTCTTCTCGGCGAGAATTTCAATCCAAAAGTTTCTGATTTCGGGTTAGCTAGACTTTGTCCAACAAATAATAGCATTGTATCATTAACCGCAGTAAGAGGAACCATTGGATACATGGCCCCTGAACTATTCTACAGAAATGTTGGCACAATATCTTACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCAAGTAGAAGGAAGAACTTGAATGCTTTGGCCAAGCAATCTAGCAAAATTTATTTCCCATTTTGGATTTATGATGAGTTACATGATGGAAGGGAAGTAACAATTGAGAATGACACAATTCCAGAAATGAAAATGGCAAAGAAAATGATGATTGTGGCTTTGTGGTGTATACAGACGAAACCAAATGATCGTCCTTCAATGGATAAAGTGTTGGAGATGCTTGAAGAAGAAGACGGCGGGGACTTGGAAATTCCTAATAAGCCTTACTTCTATCCACAAGATCAACCTGTAGCAGATGTTGGAGATGATAATATTAGCAGCTCATGGTCTACATATGGCACATCAGTAAGTGATCCCAGAGAACCAACTTGA 1623 0.3672 MPYQVYGDQDISLVKSILYVRCPNSVQNSSDIYFDEALITCMNITHENLFYVNYRFGSDKSLSKLDLGDLGDGCRVEFMYLTSWSLEHGGRRGNNNISCSDIRRMMFYGFELSWFNSLCKDGWYWYRYLDKSSHRSCASIEEWNMLEIIVTSILIYIGILLGLFSGVKFVLGAPCIIVLLIYKWRRKHLSMYDGIEDFLRSDNCIMPIRYSYKDIKKITEQFKTKLGSGGYGSVYKGKLRSGRLVAVKLLDKGKSNGQDFVNEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIYSHTEEKYSLSCEKLYAISLGVARGIEYLHNGCNMKILHFDIKPHNILLGENFNPKVSDFGLARLCPTNNSIVSLTAVRGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALAKQSSKIYFPFWIYDELHDGREVTIENDTIPEMKMAKKMMIVALWCIQTKPNDRPSMDKVLEMLEEEDGGDLEIPNKPYFYPQDQPVADVGDDNISSSWSTYGTSVSDPREPT 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01162 540 SUPERFAMILY Protein kinase-like (PK-like) 203 492 IPR011009 -
Trre1g01162 540 FunFam serine/threonine-protein kinase PBS1-like 195 294 - -
Trre1g01162 540 ProSiteProfiles Protein kinase domain profile. 220 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01162 540 MobiDBLite consensus disorder prediction 510 540 - -
Trre1g01162 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
Trre1g01162 540 SMART serkin_6 220 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01162 540 Gene3D Transferase(Phosphotransferase) domain 1 295 498 - -
Trre1g01162 540 PANTHER RUST RESISTANCE KINASE LR10-RELATED 194 510 IPR045874 GO:0004672
Trre1g01162 540 ProSitePatterns Protein kinases ATP-binding region signature. 226 248 IPR017441 GO:0005524
Trre1g01162 540 Pfam Protein kinase domain 223 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01162 540 MobiDBLite consensus disorder prediction 517 540 - -
Trre1g01162 540 Gene3D Phosphorylase Kinase; domain 1 199 294 - -
Trre1g01162 540 FunFam PR5-like receptor kinase 295 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01162 Trre-Chr1 8856066 8859383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01162 209 525 Receptor kinase-like Gene Family AT5G38280 49.538 1.84e-103 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01162 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01162 - - psat:127093935 718.383