Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01158 ATGTCATCATTGTATTGTGGCCCTCCAAAGTTCTTCAAGATTATCCAAAATCAAGAACTGCAAAATGGAGAGCTGAGGGTACCAAAGAAATTTGTGGAGAAATATTGGAAAGGAATACCAAATCCAGTAGTGATTACACTTCCTAATGGTATTCAACAAGAATTATTTTGGGTTAAGCGTGACGGGGATGTTTTGTTTCGAAAGAATTGGAAGAAAATAGTTAAGCTTTTGAAATTTGGATATGTTGTTGTTTTCAAATATGTTGGAGGATCATGTTTTCAGCTTGAGATATTTGGAACCAATTGTGTGGAAATTGACTATTCCAAGTTCATAGATGAACAAGTTAAAAAAGAATTTGTTGAAGTGGTTAATGATGAAACTAATATTGCTGGTGCAGGTACATCTCAAAGAAGAAAAAGGGGTACTAAGAGAGGTGTGAGTAGTATTAATCCAAGTTTTGACCTTAAGCTGACCCAAACTTATGCAAAGGGATATTTATTTAGGATTCCATGTGAGTTTTCAAGAAGATACCTGAGACATTTTGAAGGAAAAGCAAGAATAAGGGTTGGTGATGATAGGACTTGGAAGGTGGAGGTGAAATATGAACCTGAAGGTGATTTTTCTGTTGTCAAAAGTGGTTGGAAACCATTTGCCGAGGAGTATAACTTACAAATCGGTGATGTTTGTAAGTTTGAGATGATTCGATCAGAACCACTTCCTTTTACCATTGCTATTATCCGAGCCTCGGAAGAATCAAGTCTTAACGAGTAG 771 0.3619 MSSLYCGPPKFFKIIQNQELQNGELRVPKKFVEKYWKGIPNPVVITLPNGIQQELFWVKRDGDVLFRKNWKKIVKLLKFGYVVVFKYVGGSCFQLEIFGTNCVEIDYSKFIDEQVKKEFVEVVNDETNIAGAGTSQRRKRGTKRGVSSINPSFDLKLTQTYAKGYLFRIPCEFSRRYLRHFEGKARIRVGDDRTWKVEVKYEPEGDFSVVKSGWKPFAEEYNLQIGDVCKFEMIRSEPLPFTIAIIRASEESSLNE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01158 256 SUPERFAMILY DNA-binding pseudobarrel domain 149 248 IPR015300 -
Trre1g01158 256 CDD B3_DNA 9 98 IPR003340 GO:0003677
Trre1g01158 256 PANTHER B3 DOMAIN-CONTAINING 8 234 - -
Trre1g01158 256 Pfam B3 DNA binding domain 11 97 IPR003340 GO:0003677
Trre1g01158 256 Pfam B3 DNA binding domain 163 248 IPR003340 GO:0003677
Trre1g01158 256 Gene3D - 134 251 IPR015300 -
Trre1g01158 256 CDD B3_DNA 151 247 IPR003340 GO:0003677
Trre1g01158 256 Gene3D - 6 102 IPR015300 -
Trre1g01158 256 SMART B3_2 153 249 IPR003340 GO:0003677
Trre1g01158 256 SMART B3_2 11 101 IPR003340 GO:0003677
Trre1g01158 256 ProSiteProfiles B3 DNA-binding domain profile. 152 249 IPR003340 GO:0003677
Trre1g01158 256 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01158 Trre-Chr1 8824909 8826221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01158 9 248 REM Transcription Factor Family AT1G26680 26.744 9.30e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01158 B3 5.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01158 - - tpra:123898681 312.768