Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01157 ATGATTGCTCAAGATCCATATCTCATCATCAAGAAGAGTAAGAGTGATAAAGATGTATTGATGATTGCTCAAGATCCAAGATGGAAAGATCTTGATGCTGTTCTTAAAGCAACTCCTATATTGTCCGAGAGCGAGGCTAGAATCATTTTAGTTCAGATTTTCAAAGCCCTTGTTTACTTGAATAGCGGAACACAAAAGATCATCCATTTTGATTTAAAGCCCGAAAATGTTTTGTTTGATGAGCTTGGAGTTGCAAAAGTAACTGATTTTGGTCTTAGCAAGATAGTAGAGAATGATGTGGGATCCCAGGGTATAGAGCTTACATCCCCGGGGGCTGGAACATATTGGTATATGCCTCCTGAATGCTTCGAATACAACAAAATATCTCTTATATCATCCAAGGTTGATGTCTGGTTAGTCGGGGTATTGTTCTATGAAATGCTGTTTGGCAAACGTCCTTTTGGACATAGCCAAACACAAGAGAGCATACTTCATGAAAAAACAATTCTTAAGGCACACATGGTTGAATTTCCCTCAATGCCTACTGTTTCTGACGAGGCAAAGGAGTTTATTCGGCGCTGTCTAACATATAACCAGGATGAGAGACCAGATGTATTGATGATTGCTCAAGATCCATATCTTATTATGAAGAAGAGTTAG 660 0.3879 MIAQDPYLIIKKSKSDKDVLMIAQDPRWKDLDAVLKATPILSESEARIILVQIFKALVYLNSGTQKIIHFDLKPENVLFDELGVAKVTDFGLSKIVENDVGSQGIELTSPGAGTYWYMPPECFEYNKISLISSKVDVWLVGVLFYEMLFGKRPFGHSQTQESILHEKTILKAHMVEFPSMPTVSDEAKEFIRRCLTYNQDERPDVLMIAQDPYLIMKKS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01157 219 ProSitePatterns Serine/Threonine protein kinases active-site signature. 67 79 IPR008271 GO:0004672|GO:0006468
Trre1g01157 219 ProSiteProfiles Protein kinase domain profile. 1 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01157 219 PIRSF ILK 10 217 - -
Trre1g01157 219 Pfam Protein kinase domain 14 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01157 219 SUPERFAMILY Protein kinase-like (PK-like) 18 214 IPR011009 -
Trre1g01157 219 SMART serkin_6 7 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01157 219 PANTHER MIXED LINEAGE PROTEIN KINASE 29 217 - -
Trre1g01157 219 Gene3D Transferase(Phosphotransferase) domain 1 16 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01157 Trre-Chr1 8822365 8823633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01157 17 208 MAP Kinase Kinase Kinase AT1G14000 32.487 2.27e-20 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Trre1g01157 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01157 K08864 - mnt:112090434 308.531