Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01148 ATGAGAAGTTTAGACAGAGAGTACTACCTGCCAATAATGGTTATGGTGTTGATACAATTTATATATGCAGGATTTAGTATTGGCACAAGAATTGCACTTTTGCAAGGTATGAGCCCCAGGGTATTTGTGGTGTATCGTCATGCTTTTGCAACCATTATTCTTGCTCCTCTTGCTTATTTATCATCAAGGAGAAACTCAGCCTCTTATTCCTTAAATTTAAGGAGTTTTTCTTTGTTATTCTTGACCTCACTAATTGGCATTACATTGAATCAAAATTTATATTTTGAGGGTCTATATCTTGCTTCTTCTTCAGTTGCAAGTGCCATGGCCAATCTTGTTCCAGCACTCACATTTGTAATAGCAGCCATTGTAGGAATGGAGAGAGTGAATATTCGAAGTATAAAAACTATAGCAAAAATAGTGGGAACAATAATATGTGTAAGTGGAGCAATGTCCATGACATTGTTGAAGGGTCCAAAACTACTAAATGTAGAAAACCTGCCTTCAAAATCAATCATGACTAGAAGTGATAATGAGAACTGGTTGATGGGATGTTTGTGTCTTTTGGGAAATTGTGTTGCCTGGTCACTTTGGCTCATTTTGCAGGTTCCAGCTTATGCAAGCCATCCTAATTACTTATCATTTACAACATGGATGTGTTTTATGGCAACATTCCAATCATCAGCAGTGACACTATTCTTGGAACCAAACCTTAATGCGTGGAAGATTAATTCGATACTTCAATTTGGTTGCACTTTGTATTCAGGGATTATGGGATCTGCAGTAACAATCTCTCTACAAGCATGGTGTGTTACAAGGAGAGGACCTCTGTTCTCTGCTATGTTTAATCCTCTTTTCACTTTGATTGTGACTTTATTGGCTGCCTTGTTGCTTCACGAGGAAATGTACATTGGAAGTTTGATGGGTGCAATTGGAGTGATCATTGGCTTATATATTGTGCTTTGGGGTAAAGTTGAAGATTTAGTTGATGTTAAGGAGAATGTAGAACCTCTTTTAGAAGATGAATTTATAGTTCATAATTGA 1044 0.3697 MRSLDREYYLPIMVMVLIQFIYAGFSIGTRIALLQGMSPRVFVVYRHAFATIILAPLAYLSSRRNSASYSLNLRSFSLLFLTSLIGITLNQNLYFEGLYLASSSVASAMANLVPALTFVIAAIVGMERVNIRSIKTIAKIVGTIICVSGAMSMTLLKGPKLLNVENLPSKSIMTRSDNENWLMGCLCLLGNCVAWSLWLILQVPAYASHPNYLSFTTWMCFMATFQSSAVTLFLEPNLNAWKINSILQFGCTLYSGIMGSAVTISLQAWCVTRRGPLFSAMFNPLFTLIVTLLAALLLHEEMYIGSLMGAIGVIIGLYIVLWGKVEDLVDVKENVEPLLEDEFIVHN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01148 347 PANTHER WAT1-RELATED PROTEIN 10 326 IPR030184 GO:0016020|GO:0022857
Trre1g01148 347 Pfam EamA-like transporter family 183 321 IPR000620 GO:0016020
Trre1g01148 347 Pfam EamA-like transporter family 11 147 IPR000620 GO:0016020
Trre1g01148 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 231 324 - -
Trre1g01148 347 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01148 Trre-Chr1 8707338 8711804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01148 7 346 Nodulin-like Gene Family AT4G30420 52.616 1.16e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01148 - - gmx:100812331 442.195