Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01145 ATGACTGCACTGCAGTCGGTCAAATCTGGACCGTTCAATTCTTCCCGTGAAATCTCCTTTCTTCAGGGTGTTTCTTCTGACGTCTTTGGAGAGGGGAAAACAACGAAGATGAAGACTCCGAGCAAGAAAAACAAAAGTACCAAAGAGAACAAGGGTAAAACCAATGGAGAAGGTGATTCATATATGTCCGAAAGCAATGTAGTTGATGATATGCCTTTGGCCAAACGTAATGACGATCAACATTTGGTTAAAAGCAATAAATGTGAAGATGGCAAGCAGGGCAAGAAGAAAAATAAAAAGAAGAAACTGAGTGAAGAAAGCAAACATAAGGAGTTCAAAAGCAATGAATGTGAAGATGATAACCAAGGAAAAAAGATGAAAAAGAAGCAGAAGCTAATTGAAGGAAACACACTGAAGGACTGTAATGACTTTAGAAGCAATGGAGGTGAACATGGTGTGCAAGACAAGAAGATGAAGAAAAAAAAGAAGAAACTAAGTGAAGAAAGCAAATATAAGGAGTATAGCGAGTCCAAAAGCAATGAATGTGAAGATGACCAAGGAAAGAAGATGAAAAAGAAGAAGAAATTAATTGAAGGAAACACACTTAATGAGTGTAATGACTTTATAAGCAATGGAGGTGAGGATGGTGGGCAAGACAAGAAGATGAAGAAAAAGAAACTAAGTGAAGAAAGTAAGCATAAGGAGTATAGCGAGTTTAAAAGCAATGAATGTGAAGATGATGGCCAAGGAAAGAAAATGAAGAAGAAACTAATTGAGGAAGGCAAACATAAGGATTATAATGACATTATAAGCAATGAAGGTGGAGATGCTGACCAATGCAAGACGATGAAGAAGAATAAACTGAGTGACAAAAGGAAAAGTATGGAGAATAATGATCAAGTCAAAAAGAAGAAAAAAAAGGAAGCAAAGGCGGTTACAAGCGAGTCTCCTAACTATGCACATAATGAATCTCCTAACTTAGAACCTAATGGATCATGCAAACCCAAACATGTAACTTTTTCTGAAGAAGTGGAAATGGTTTGTTGTGATGGCTTATTGCGTGGGAAAAGGTTTACACCCGAAGAAGATGAGAAGATCAAAGAGTCTGTTTTTGACTTTATAGATTCTCGTGGTTTGGGAGATAACGGCCTGGATAAGATTCTTCATTCCAAATCACATGCCGAGACTAGAGGCTGTTGGAAAATAATCGCAAAAGTCCTACCTCATAGGCCCATCCGTAGTGTGTGTCTACGTGCTCATAAGTTATTGGAAACGAGTGGGAGGTGTAGATGGACACCTGACGAGCTTAAATTAATACGGAAGTCCTACGAGCAACATGGAGCTAAATGGAGACTAGTAGCTGATGCTTTGGGTAAAAGTCGAGAACAGGTAAAAAGTGCGTGGCGTAGATTAAAATTTGAAAATGCAAAAGTAGGACCATGGTCCCAAGAAGAGTATCAAACTTTATTTAATTTAGTAAACCTGGATCTGCGCACAAGGGCTTCAGAGCCTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGATGCAATTGCTCACAAATTGGAAACCCGAGACAGTGCATCTTGCTGCCTGAGGTGGTATGATAATTTAACATCGCCAATGGTTGCTACTGGTGATTGGTGTGATACTGACGACTACCGCTTGATAAATGCTTTATATACTTTGGATGCTTGTTGCATGGAGGAGGTAGACTGGGACGAGCTACTTGAGCATAGGTCTGGTGATGTATGCAGAAAACGATGGGATCAAATGGTGAAACATATTGGGGAGCATGCAAGAAAGACATTTATTGAACATGTTGAAATTCTCACAAAGAGATTCTGCCCTGACTTGTTGGAAGCAAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTAA 1914 0.3913 MTALQSVKSGPFNSSREISFLQGVSSDVFGEGKTTKMKTPSKKNKSTKENKGKTNGEGDSYMSESNVVDDMPLAKRNDDQHLVKSNKCEDGKQGKKKNKKKKLSEESKHKEFKSNECEDDNQGKKMKKKQKLIEGNTLKDCNDFRSNGGEHGVQDKKMKKKKKKLSEESKYKEYSESKSNECEDDQGKKMKKKKKLIEGNTLNECNDFISNGGEDGGQDKKMKKKKLSEESKHKEYSEFKSNECEDDGQGKKMKKKLIEEGKHKDYNDIISNEGGDADQCKTMKKNKLSDKRKSMENNDQVKKKKKKEAKAVTSESPNYAHNESPNLEPNGSCKPKHVTFSEEVEMVCCDGLLRGKRFTPEEDEKIKESVFDFIDSRGLGDNGLDKILHSKSHAETRGCWKIIAKVLPHRPIRSVCLRAHKLLETSGRCRWTPDELKLIRKSYEQHGAKWRLVADALGKSREQVKSAWRRLKFENAKVGPWSQEEYQTLFNLVNLDLRTRASEPYRKSKHGMLRDNIGWDAIAHKLETRDSASCCLRWYDNLTSPMVATGDWCDTDDYRLINALYTLDACCMEEVDWDELLEHRSGDVCRKRWDQMVKHIGEHARKTFIEHVEILTKRFCPDLLEAREAFDNKPVIC 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01145 637 MobiDBLite consensus disorder prediction 315 329 - -
Trre1g01145 637 MobiDBLite consensus disorder prediction 207 332 - -
Trre1g01145 637 Pfam Myb-like DNA-binding domain 431 489 - -
Trre1g01145 637 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g01145 637 SUPERFAMILY Homeodomain-like 522 601 IPR009057 -
Trre1g01145 637 MobiDBLite consensus disorder prediction 1 194 - -
Trre1g01145 637 MobiDBLite consensus disorder prediction 278 312 - -
Trre1g01145 637 SMART sant 354 425 IPR001005 -
Trre1g01145 637 SMART sant 427 474 IPR001005 -
Trre1g01145 637 SMART sant 477 544 IPR001005 -
Trre1g01145 637 Gene3D - 472 547 - -
Trre1g01145 637 PANTHER GB|AAC33480.1 36 636 - -
Trre1g01145 637 ProSiteProfiles Myb-like domain profile. 473 542 IPR001005 -
Trre1g01145 637 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 428 476 IPR017930 -
Trre1g01145 637 CDD SANT 480 542 IPR001005 -
Trre1g01145 637 ProSiteProfiles SANT domain profile. 426 476 IPR017884 -
Trre1g01145 637 MobiDBLite consensus disorder prediction 71 93 - -
Trre1g01145 637 SUPERFAMILY Homeodomain-like 402 484 IPR009057 -
Trre1g01145 637 MobiDBLite consensus disorder prediction 214 271 - -
Trre1g01145 637 ProSiteProfiles Myb-like domain profile. 544 597 IPR001005 -
Trre1g01145 637 MobiDBLite consensus disorder prediction 166 194 - -
Trre1g01145 637 ProSiteProfiles Myb-like domain profile. 428 472 IPR001005 -
Trre1g01145 637 MobiDBLite consensus disorder prediction 36 55 - -
Trre1g01145 637 CDD SANT 430 472 IPR001005 -
Trre1g01145 637 Gene3D - 432 471 - -
Trre1g01145 637 MobiDBLite consensus disorder prediction 104 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01145 Trre-Chr1 8690702 8694318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01145 425 598 MYB Transcription Factor Family AT5G02320 25.000 1.64e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g01145 Myb_DNA-bind_6 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01145 - - mtr:112416380 632.098