Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01130 ATGACGGATGTATGTGAAAAAATGAGCAAGGGGCTAAAAAATATTAAGCCCTATCTTGCTATGGTGTCCCTTCAATTTGGCTATGCAGGAATGTACATCATCACTATGGTTTCATTCAAGCATGGCATGAGTCATTGGGTACTCTCTGTGTACCGTCATGTTGTCGCTACTATCTTCATGGCTCCTTTTGCCCTCGTCCTCGAAAGAAAAATTAGGCCAAAGATGACACTCCCCATTTTCTTGAGGTTGGCGGTCCTTGGTTTCCTTGAGCCAGTGCTTGATCAAAATTTGTACAACTTGGGAATGAAGAACACATCAACAACATTTGCATCTGCTACCGTTAACATTCTTCCAGCTATTACTTTTATAATGGCAATCATTTTCAGGTTAGAGACCGTTAACTTCAGAAAAATTCACAGCATAGCAAAAGTAGTTGGAACAGTTGTAACTGTATCGGGAGCAATGGTTATGACATTATACAAAGGCCCTGCCTTTCAACTCATTAAGGGACAATCAACAAATCAGCATGAAAGTGGAAGCACTGAACCCTCTGAACAAAATTTTGTGGCTGGGACTATAATGCTCATTTGCAGTTGTGGTGGTTGGGCTAGTTTCTTTATCTTGCAATCTTTCACTTTGAAGATGTACCCAGCAGAACTCTCTATGACTGCTTGGATTTGCTTTTTGGGTATCTTTGAAGGTGCAATTGCAACCTTCATATTTGAACGTGACATGAGTGTTTGGTCTTTAGGCTTTGACTCTAGACTTCTTGCTTGTGTTTACTCTGGTATTGTGTGTTCTGGAATGGCATACTATGTACAAGGAGTTGTGACAAGAGAACGTGGGCCTGTGTTTGTTACTTCCTTCAGCCCTTTATGTATGATCATCACAGCTGCATTGGGTTCTATTGTCTTAGCTGAGCAAACTCATTTGGGAAGTATTATTGGAGCTATTATCATTGTGTGTGGACTATACACTGTGGTGTGGGGGAAAAGCAAAGACAGTGTGAACAATACAACACAAAATGAGGGACAAGAATTGCCAATAAAGGATGCTACAAAAACAGGGTCAGACATTTTTGAAAGTGTTGAGGTCAATGTTCCTAATGATATTAAGCTTGGAGGAAAGAATGTCAAAACATAA 1143 0.4024 MTDVCEKMSKGLKNIKPYLAMVSLQFGYAGMYIITMVSFKHGMSHWVLSVYRHVVATIFMAPFALVLERKIRPKMTLPIFLRLAVLGFLEPVLDQNLYNLGMKNTSTTFASATVNILPAITFIMAIIFRLETVNFRKIHSIAKVVGTVVTVSGAMVMTLYKGPAFQLIKGQSTNQHESGSTEPSEQNFVAGTIMLICSCGGWASFFILQSFTLKMYPAELSMTAWICFLGIFEGAIATFIFERDMSVWSLGFDSRLLACVYSGIVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSIVLAEQTHLGSIIGAIIIVCGLYTVVWGKSKDSVNNTTQNEGQELPIKDATKTGSDIFESVEVNVPNDIKLGGKNVKT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01130 380 PANTHER WAT1-RELATED PROTEIN 16 340 IPR030184 GO:0016020|GO:0022857
Trre1g01130 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 152 - -
Trre1g01130 380 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 332 - -
Trre1g01130 380 Pfam EamA-like transporter family 29 151 IPR000620 GO:0016020
Trre1g01130 380 Pfam EamA-like transporter family 191 328 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01130 Trre-Chr1 8513618 8519620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01130 12 359 Nodulin-like Gene Family AT1G44800 63.456 1.45e-167 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01130 - - tpra:123903307 739.569