Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01124 ATGAAGAACCTCATCGATCTCGGCACTCCGAATCAACAAGCAGTTGGTGAACAACAACAACAGCTTCAAGGATCATGTACCCCTCAAAACAACAACAAGAAGAGAAAATCCCCTGCAAAATCCACTCCTAGAAAAAAAAGCTCCAAGAATAACACGCCGAAGAAAAATGCTTCGGTTAATGGAATTAATGGGACTACTTTTCCTGATGTGGCTCGGAAAATCGATTTGCGGTTGGAGGCGAAATTGTCAGCTGAGGAAAATTCGCGGATGTTTGCGGGACGACAAATACATCCGTTCTTTTCATCGTGGAAGGTGGAGAAGAAAAGTCGGGAGTCTGCTGATTCGGAGTGCAGTTTGTCCGATGCTAAGAAGGAGAATGGAAGAACTATTTGCGGTCCTATTCATGTATTTGAAGATAGTCGGGATGATACTTCATCACTTGACTGGAGTGACTGGAAATTTTTAGGAAATACCACCGTTGTGGATTGTGGTCCAGAAAGTTCAAATTTATCTGTTATGGAGGGTTCTGTTGAACCCTTAAATTTTGATAACTTGCTTAGTGGTGTAAAACCCTCAAGCACTTCAATTTCTCAGAATGCCTTGTCTTGTTCAGATAAACTATCTACACAATCAGAAAATATGATGGAAATGTCCCCAGAAAACTCAACTGTGCTAGCTAATGAGCAGGCAAAATGCACTTTAAAGCCGGAAGATGCCATAGTGGACTTGGAGGTGGATGAAGTCAGTACTGTATCCGGGCAAGCATGCATTAACGGAAAATCAGATACTGAGCCACTGAATAGGTTTCTTCAAGAAAGGATGGGATCTTTCTACCATAGTTGTGAAGATAAGACTGACAGTAGCTTATGGATACACAAGTACAAGCCAACAAAAGCCTCAGAGGTATGTGGTAATGTTGAATCCATGAATTTCTTGCGCGACTGGTTAAATCTTTGGCGCGAAAGACGTTATCCAAACAGAAAGGATTCCTCTAACAAGGATCAAATTGACATGCCAAATGATGATGGTGATTATAACTGTCCTGATTTTGACTATGATTCAAAAGATGTTGACGAGGAGGGTTCCCTGAAGAATGTTCTTTTAATTACAGGACCAGTTGGGAGTGGCAAGTCTGCAGCTGTTTATGCTTGTGCCCGGGAGCAAGGGTTTGACGTTTTAGAGCTCAATGCATCAGACTGTCGAAATGGGGTTGCTGTCAAGCAGTATTTTGGAGATGCTCTTGGATCACATGGTGTCAAAAGGTTAGTGGAACACACTGTGAGTTCACAGAAGAAAACTGTGAAACTGCTTCCGGCCCCAACTTCACCGAATGTTAAAGCAGCTGATCAGAAAGATGATGATGTGATTGAAATGATAACCGTATCTGATGATGGAGCTCATAGTCCTGGTGGAACATCTCAGAAGTTACTTGACACAAATAATGCACTTACATCTAATTCTGTCCAAACTTTAATTCTAGTTGAGGATGTGGACATCCTTTTTCCTGAAGATCGTGGATGTATTGCTGCCATACAACACATTGCTGAGACAGCAAAAGGGCCAATTATACTGACCAGCAACAGTAAAAATGCTGGGCTGCCAATTAATTTCTGTAGACTACATGTTTCTTTCTCATTGCCATTGCCAGATGAGTTGCTTTGCCATTTGTTCACGGTTTGTGCCGCAGAAGAAGTCAACGTCGATCCTCTTTTATTGGAGAAGTTTATCCAGTCTTGTGACAGGGATATTCGTAAAGCCATTATGCACCTTCAGTTCTGGTTCCAGAATAAAAAACATAGCAAAGACAAGAAAGTGCAGACAGTATATGGCTCACTACCTTCTGATCTAGAGGCTGGTCATAAGATACTACCAAAGATAATACCCTGGAGTTTTCCCTCAGAGTTATCCAAACTAATTGAGAAGGAAGTTGCCAAGTCAATAACCATAATGGAAAACAACTCAAACTGGGAAGGGTTAGCTATTGAAGAGCTTTGCATAAATGACAAGCAAAATAACTTAGATGTGCAGTGTATGGGAACTGATTATTTAGATCCCAAAGTAGAGGTCACGAAGAGGACTGCACCTATTACGGACAGCGGTGAGTTTGAAAGTCAATATAGTGCTATCTCTGAGCTTTGTAATTGTTCTGGATCCTCAGTAACATCCTCTTGGCAAACCGACCAAAATAAACTTGTAGATATGTCCTCGGATGCTATGGATAAGGATCCATATAATAGACATTCTGTAAATGTTCATGAGGAAGCTTACAAGAGACAATGCCTTGAAGGCAACGGTGAATCTTCCTTTGCATTTCTATTGAATCAAAGCTATGCCAGTATGTCATTTTGCGAGCTGCTGCGTTCTGGTTTGGAAAATTCAGAGGACGAGCAGTGTAAATATTTAGAAACAACGTATGATGCCTGCTTAAACAAAACACCTAAATCACTTGATATGTCTTGTTTTCCAGAATCAAGACTTGTTTCCGAGACTGCAATCCAAAATAGAATAGAAACAAAGTCTGAAGTAATGTCATATGGTGACCATCTTGCTTGTCCGGTAGATGCTTCTCTGGATAATGAGATGACACCATTCTCTTTTGGAGTTTGTCAGCGCTTGGCCGAAGTGTCTCGAGATCGAGATTTGTTGGTGAATACTGAAATTCCCAAATCTTTTCCAAGAACAACAGCACAGGATTTTATTGATGAAAACATGGAAATCCCAACTGTGTATAACACGTTGGATGAGTGCAGTCAAACTGATATTAAGTTGAAGTCAATTTTTGTTGATTCTAGTCAATCTACGGAGATAGATTTGGTGCAAAGTTTGTGGACGAAACTTCGTGATTGTCGAACAGATTTAAAACAGCATGCCGCCTCAGAACAGATAGGTGCTATCGAGGTTGTTAAACTTTCTAGTGGGCTAAGCAATCTAATTTCAGAAGCTGATTTGTTGTTTCGTAATCACCAGCAAAAACAATGTGGTATTATGGAACCTCCAACTTTCCTGTCTGATGAATCCACCTTTAGTTGGTATGATGAACAAATGATGATGTCAACTGTTGCTGTACATGGATTTTGCTTTTATGCCAAGCATATAGTAGATGCGGGATCCAAATTGGGTTTTGCGAACATGGTCGACATAACTTCAGAGATGTTGGCTTCTACTACAAATATTATGGCTCTGGGGAAATTATCAAGACAGGACCACACCAAACCCATGAGCAAATTTACTAAGGAGGTTTTAGAGGTGAACAACCCAAGGAATGATAAGAAGAGCATGCAATATGAAGAAAGAAGAGCATCTCTGTTCAACGTGATCAGATCCATTGTTCCTTCAAGATCATCAACAACGGCAATTAAAGGCATTGCATTTAGTGAATATCTTTCTTCACTGCGCCAAATTTCAATTTCAGAGGGTTTCCGCATTTCACAAGGTGTTAAAAAGATGAGGAGAGGAAGGCGGAATGCTGAACATTATTTGAGCAGAGTTAAAATGGTGTTGTCTCCTGAAGATATATCAATGGTGTGTGAAGGTGATTTGTACAGAAAGATATCTTCACAGTATGCTGCTAACATGGAAAGCAACTGCACAGGATTAAACATTGTAGCTCAGATTTAA 3618 0.4046 MKNLIDLGTPNQQAVGEQQQQLQGSCTPQNNNKKRKSPAKSTPRKKSSKNNTPKKNASVNGINGTTFPDVARKIDLRLEAKLSAEENSRMFAGRQIHPFFSSWKVEKKSRESADSECSLSDAKKENGRTICGPIHVFEDSRDDTSSLDWSDWKFLGNTTVVDCGPESSNLSVMEGSVEPLNFDNLLSGVKPSSTSISQNALSCSDKLSTQSENMMEMSPENSTVLANEQAKCTLKPEDAIVDLEVDEVSTVSGQACINGKSDTEPLNRFLQERMGSFYHSCEDKTDSSLWIHKYKPTKASEVCGNVESMNFLRDWLNLWRERRYPNRKDSSNKDQIDMPNDDGDYNCPDFDYDSKDVDEEGSLKNVLLITGPVGSGKSAAVYACAREQGFDVLELNASDCRNGVAVKQYFGDALGSHGVKRLVEHTVSSQKKTVKLLPAPTSPNVKAADQKDDDVIEMITVSDDGAHSPGGTSQKLLDTNNALTSNSVQTLILVEDVDILFPEDRGCIAAIQHIAETAKGPIILTSNSKNAGLPINFCRLHVSFSLPLPDELLCHLFTVCAAEEVNVDPLLLEKFIQSCDRDIRKAIMHLQFWFQNKKHSKDKKVQTVYGSLPSDLEAGHKILPKIIPWSFPSELSKLIEKEVAKSITIMENNSNWEGLAIEELCINDKQNNLDVQCMGTDYLDPKVEVTKRTAPITDSGEFESQYSAISELCNCSGSSVTSSWQTDQNKLVDMSSDAMDKDPYNRHSVNVHEEAYKRQCLEGNGESSFAFLLNQSYASMSFCELLRSGLENSEDEQCKYLETTYDACLNKTPKSLDMSCFPESRLVSETAIQNRIETKSEVMSYGDHLACPVDASLDNEMTPFSFGVCQRLAEVSRDRDLLVNTEIPKSFPRTTAQDFIDENMEIPTVYNTLDECSQTDIKLKSIFVDSSQSTEIDLVQSLWTKLRDCRTDLKQHAASEQIGAIEVVKLSSGLSNLISEADLLFRNHQQKQCGIMEPPTFLSDESTFSWYDEQMMMSTVAVHGFCFYAKHIVDAGSKLGFANMVDITSEMLASTTNIMALGKLSRQDHTKPMSKFTKEVLEVNNPRNDKKSMQYEERRASLFNVIRSIVPSRSSTTAIKGIAFSEYLSSLRQISISEGFRISQGVKKMRRGRRNAEHYLSRVKMVLSPEDISMVCEGDLYRKISSQYAANMESNCTGLNIVAQI 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01124 1205 MobiDBLite consensus disorder prediction 1 36 - -
Trre1g01124 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 607 IPR027417 -
Trre1g01124 1205 Gene3D - 547 611 - -
Trre1g01124 1205 MobiDBLite consensus disorder prediction 37 51 - -
Trre1g01124 1205 MobiDBLite consensus disorder prediction 1 66 - -
Trre1g01124 1205 Gene3D - 287 541 IPR027417 -
Trre1g01124 1205 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 549 610 - -
Trre1g01124 1205 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 16 1186 IPR004582 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01124 Trre-Chr1 8479423 8487861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01124 290 592 Core DNA Replication Machinery Family AT5G22010 22.403 2.12e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01124 K26118 - gmx:100815984 1389.79