Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01120 ATGTCTCACAATCGCATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCTTTTCTCCATTTCCTCAACCATGTTGAACCTAGTCCTGGTGTTGATGCTGAAGGGATTGAAGTAGCTAAGGAGTGTTTGGTAGAGGCTTTTAAGATTAATAGCTCATCTTCTGTAACTGGTGATCCTGATTCATTGATTGACATTTTCAACTCATTTGATGCAAACAAGCAATGTGAAAGAAGTAGGTCTGATTCTGTGAAAGCTTCAAGTTCTGCACCGAGTGCTCCTGATGCGTCGAAATCCATGGATGAAGATTGGATGCTGGACCCTCTCATTTCTGCAGTGTCTAAAGATGAACTGTGTGGACAATTCTTTGCTGTTCTGGAGAAAAAACGCTATTTCAGGACCAATATTGATGGAGGTGATGACATTGTGCAATTGGAGAAAGCATCTCGCTTATTTGATGATGGTTTTATGGAGTTGGAAAGATCTGGGTGTCAGCAGTTTAATTTGAAGAATATGGCTGAATCACTGAAATCACTAGGTAACAAGGCAATGCAATCCAAGCGATACTATGATGCAATTGAGTTGTATAATTGTGCAATTGCGATATATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAAATATACAGAGGCAATCCAAGATTGTCTTAGATCTATCGAGATTGATCCGAACTACAGCAAAGGATACAGTCGTCTGGGATTTGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAATTGGATCCCAACAACGAGTCTGTTAAAGAAAATATGAGGGCAGCTGAGCATAAATTGATGGAAGAGCAACATCGTGGACATCACAATCAGAATTCAAGATCATCTCAAGAATCCCAAAACCATTCTGCAAGGGGATCAAGAAGCCATGCAGCTCCGCCTCCATTTTCCTCAATGCCATTTAACCCCGGCAATCTTGCAAGCATGTTCATGGCGGCCACAAATGCGTATCAGAGGTCACGTTCTCAGGAAAGTCAAGAAGATGGCAATAGTAGTGGAGCTAATGAACCGGAAATTCAATTTGGGGGCAATGCCAATGTAAACCATGATCAAATCCCTCAGGAACTAAGAGGTGCCTTTCAATCCGTGATGGATATGTTATCAGGAGGGAATGTACCTCCCGGGCAACCACATGATCAAATGAATGGAAGTCAAGAAGATGCCAATAGTAGTGAAGCTGACGAACCCGAAATTCAATTTGGGGGCCATGTTGATTTAAACTCTGTTCAAATCCCTCAGGACCTAAGTGGTGTCCTTCAGAATGTGATGGGGATGTTTTCAGGGAATGCACCTCCCGAGCAACCACATGATCAAATGAATGATAGAACGGCACCAAACTAA 1431 0.4221 MSHNRITTDSPLSRRIVRSFLHFLNHVEPSPGVDAEGIEVAKECLVEAFKINSSSSVTGDPDSLIDIFNSFDANKQCERSRSDSVKASSSAPSAPDASKSMDEDWMLDPLISAVSKDELCGQFFAVLEKKRYFRTNIDGGDDIVQLEKASRLFDDGFMELERSGCQQFNLKNMAESLKSLGNKAMQSKRYYDAIELYNCAIAIYEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKGYSRLGFAYYAQGNYRDAIDKGFKKALQLDPNNESVKENMRAAEHKLMEEQHRGHHNQNSRSSQESQNHSARGSRSHAAPPPFSSMPFNPGNLASMFMAATNAYQRSRSQESQEDGNSSGANEPEIQFGGNANVNHDQIPQELRGAFQSVMDMLSGGNVPPGQPHDQMNGSQEDANSSEADEPEIQFGGHVDLNSVQIPQDLSGVLQNVMGMFSGNAPPEQPHDQMNDRTAPN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01120 476 MobiDBLite consensus disorder prediction 455 476 - -
Trre1g01120 476 MobiDBLite consensus disorder prediction 293 333 - -
Trre1g01120 476 MobiDBLite consensus disorder prediction 346 379 - -
Trre1g01120 476 MobiDBLite consensus disorder prediction 303 317 - -
Trre1g01120 476 ProSiteProfiles TPR repeat profile. 208 241 IPR019734 GO:0005515
Trre1g01120 476 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 169 321 - -
Trre1g01120 476 PANTHER LD24721P 3 468 IPR047150 -
Trre1g01120 476 Pfam Tetratricopeptide repeat 243 276 IPR013105 -
Trre1g01120 476 ProSiteProfiles TPR repeat profile. 242 276 IPR019734 GO:0005515
Trre1g01120 476 SMART tpr_5 174 207 IPR019734 GO:0005515
Trre1g01120 476 SMART tpr_5 208 241 IPR019734 GO:0005515
Trre1g01120 476 SMART tpr_5 242 276 IPR019734 GO:0005515
Trre1g01120 476 Pfam Tetratricopeptide repeat 208 241 IPR001440 GO:0005515
Trre1g01120 476 MobiDBLite consensus disorder prediction 79 101 - -
Trre1g01120 476 Coils Coil 276 296 - -
Trre1g01120 476 MobiDBLite consensus disorder prediction 405 419 - -
Trre1g01120 476 MobiDBLite consensus disorder prediction 395 425 - -
Trre1g01120 476 Gene3D Immunoglobulin FC, subunit C 3 74 - -
Trre1g01120 476 SUPERFAMILY TPR-like 173 287 IPR011990 GO:0005515
Trre1g01120 476 Gene3D Tetratricopeptide repeat domain 167 328 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01120 Trre-Chr1 8455755 8465543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01120 173 272 U-box Gene Family AT3G07370 31.000 1.97e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01120 K16365 - gmx:100799770 538.495