Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01119 ATGTCTCACAATCGCATCACCACCGATTCCCCTCTCTCTCGTCGCATAGTTCGTTCTTTTCTCCATTTCCTCAACCATGTTGAACCTAGTCCTGGTGTTGATGCTGAAGGGATTGAAGTAGCTAAGGAGTGTTTGGTAGAGGCTTTTAAGATTAATAGCTCATCTTCTGTAACTGGTGATCCTGATTCATTGATTGACATTTTCAACTCATTTGATGCAAACAAGCAATGTGAAAGAAGTAGGTCTGATTCTGTGAAAGCTTCAAGTTCTGCACCGAGTGCTCCTGATGCGTCGAAATCCATGGATGAAGATTGGATGCTGGACCCTCTCATTTCTGTGTCTAAAGATGAACTGTGTGGACAATTCTTTGCTGTTCTGGAGAAAAAACGCTATTTCAGGACCAATATTGATGGAGGTGATGACATTGTGCAATTGGAGAAAGCATCTCGCTTATTTGATGATGGTTTTATGGAGTTGGAAAGATCTGGGTGTCAGCAGTTTAATTTGAAGAATATGGCTGAATCACTGAAATCACTAGGTAACAAGGCAATGCAATCCAAGCGATACTATGATGCAATTGAGTTGTATAATTGTGCAATTGCGATATATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAAATATACAGAGGCAATCCAAGATTGTCTTAGATCTATCGAGATTGATCCGAACTACAGCAAAGGATACAGTCGTCTGGGATTTGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAATTGGATCCCAACAACGAGTCTGTTAAAGAAAATATGAGGGCAGCTGAGCATAAATTGATGGAAGAGCAACATCGTGGACATCACAATCAGAATTCAAGATCATCTCAAGAATCCCAAAACCATTCTGCAAGGGGATCAAGAAGCCATGCAGCTCCGCCTCCATTTTCCTCAATGCCATTTAACCCCGGCAATCTTGCAAGCATGTTCATGGCGGCCACAAATGCGTATCAGAGGTCACGTTCTCAGGAAAGTCAAGAAGATGGCAATAGTAGTGGAGCTAATGAACCGGAAATTCAATTTGGGGGCAATGCCAATGTAAACCATGATCAAATCCCTCAGGAACTAAGAGGTGCCTTTCAATCCGTGATGGATATGTTATCAGGAGGGAATGTACCTCCCGGGCAACCACATGATCAAATGAATGGAAGTCAAGAAGATGCCAATAGTAGTGAAGCTGACGAACCCGAAATTCAATTTGGGGGCCATGTTGATTTAAACTCTGTTCAAATCCCTCAGGACCTAAGTGGTGTCCTTCAGAATGTGATGGGGATGTTTTCAGGGAATGCACCTCCCGAGCAACCACATGATCAAATGAATGATAGAACGGCACCAAACTAA 1428 0.4216 MSHNRITTDSPLSRRIVRSFLHFLNHVEPSPGVDAEGIEVAKECLVEAFKINSSSSVTGDPDSLIDIFNSFDANKQCERSRSDSVKASSSAPSAPDASKSMDEDWMLDPLISVSKDELCGQFFAVLEKKRYFRTNIDGGDDIVQLEKASRLFDDGFMELERSGCQQFNLKNMAESLKSLGNKAMQSKRYYDAIELYNCAIAIYEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKGYSRLGFAYYAQGNYRDAIDKGFKKALQLDPNNESVKENMRAAEHKLMEEQHRGHHNQNSRSSQESQNHSARGSRSHAAPPPFSSMPFNPGNLASMFMAATNAYQRSRSQESQEDGNSSGANEPEIQFGGNANVNHDQIPQELRGAFQSVMDMLSGGNVPPGQPHDQMNGSQEDANSSEADEPEIQFGGHVDLNSVQIPQDLSGVLQNVMGMFSGNAPPEQPHDQMNDRTAPN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01119 475 Pfam Tetratricopeptide repeat 242 275 IPR013105 -
Trre1g01119 475 SUPERFAMILY TPR-like 172 286 IPR011990 GO:0005515
Trre1g01119 475 MobiDBLite consensus disorder prediction 292 332 - -
Trre1g01119 475 Coils Coil 275 295 - -
Trre1g01119 475 MobiDBLite consensus disorder prediction 404 418 - -
Trre1g01119 475 MobiDBLite consensus disorder prediction 394 424 - -
Trre1g01119 475 ProSiteProfiles TPR repeat profile. 207 240 IPR019734 GO:0005515
Trre1g01119 475 Pfam Tetratricopeptide repeat 207 240 IPR001440 GO:0005515
Trre1g01119 475 PANTHER LD24721P 3 467 IPR047150 -
Trre1g01119 475 MobiDBLite consensus disorder prediction 79 101 - -
Trre1g01119 475 Gene3D Tetratricopeptide repeat domain 166 327 IPR011990 GO:0005515
Trre1g01119 475 ProSiteProfiles TPR repeat profile. 241 275 IPR019734 GO:0005515
Trre1g01119 475 Gene3D Immunoglobulin FC, subunit C 3 74 - -
Trre1g01119 475 SMART tpr_5 173 206 IPR019734 GO:0005515
Trre1g01119 475 SMART tpr_5 207 240 IPR019734 GO:0005515
Trre1g01119 475 SMART tpr_5 241 275 IPR019734 GO:0005515
Trre1g01119 475 MobiDBLite consensus disorder prediction 454 475 - -
Trre1g01119 475 MobiDBLite consensus disorder prediction 345 378 - -
Trre1g01119 475 MobiDBLite consensus disorder prediction 302 316 - -
Trre1g01119 475 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 168 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01119 Trre-Chr1 8455755 8465543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01119 172 271 U-box Gene Family AT3G07370 31.000 1.86e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01119 K16365 - gmx:100799770 542.347