Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01101 ATGGGAGATTCCAAGGTAGAAACAATTTCCCGATTAGCTCAATGGAAAATCGACAACTTCGGACCTTGTTCTTACAAGAAATCCGACCCTTTCAAAATGGGTATCTGGAATTGGTATTTGTCGATAGAGAGAAATAGATATCTATATATACATCTATTTCCTGAACCTTCTAGACTTTCTAAGGAACAACCTCCTATTGCTCGCTTCATTCTTCGTGTTTCCAATACTGCTTCATCTTCCTCCTCTTCCCGCAGATTTTACATTTCCCCTGTACATGAAAGGGTGCTTAGAACATGTGACGACTTTGTCTGGCCTGTGGATACTACATTCCTTGGTCGCTTGATTATTGATGTTGAATTTCTTGACCTGAAGATCCATCCTCTGAATGGTGGAGAAGCCAGTTCTATATGGCCATCTGACGGAAAACTGCAATCTGTTGCAACTCAAAACACTCTCCAATGCCTCTCTCGCATGCTTGATGAAGCTATACATGCTGACCTCACCATTATAACAGCAGACGGTACACTCAAGGCACATAAAGCAGTCTTGTCCGCAACTTCTCCTGCGTTCCAGGCCTCCTATCATGACAGCAGCGAAGATAAAGAGTCGTCTACAATACACATAGAAGACATGTCACAAGAATCCTGCATGGCCCTTCTAAGTTACATGTACGGCACAATAAAACCCGGAGATTTCTGGAAACACAGGCTTGCATTGCTTGGAGCAGCCAATAAATACGACATTGGCGATCTCAAAGATGCGTGTGAGGAAAGCCTACTCGAAGATCTTAACTCAGGAAATGTTCTCGAGAGGCTGAATGAGGCTTGGTTGTACCAGCTGCAAAAGTTAAAGAAAGGATGTTTCATATTCTTATTTGATTTCGGTAAGATATATGATGTTAGAGAAGAAATAAATACATTTTTTAGTCATGCAGATAGGGATCTAATGCAGGAGATGTTTCAAGAAGTGCTTACAATTTGGAAATAG 987 0.4144 MGDSKVETISRLAQWKIDNFGPCSYKKSDPFKMGIWNWYLSIERNRYLYIHLFPEPSRLSKEQPPIARFILRVSNTASSSSSSRRFYISPVHERVLRTCDDFVWPVDTTFLGRLIIDVEFLDLKIHPLNGGEASSIWPSDGKLQSVATQNTLQCLSRMLDEAIHADLTIITADGTLKAHKAVLSATSPAFQASYHDSSEDKESSTIHIEDMSQESCMALLSYMYGTIKPGDFWKHRLALLGAANKYDIGDLKDACEESLLEDLNSGNVLERLNEAWLYQLQKLKKGCFIFLFDFGKIYDVREEINTFFSHADRDLMQEMFQEVLTIWK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01101 328 SMART BTB_4 165 263 IPR000210 GO:0005515
Trre1g01101 328 ProSiteProfiles BTB domain profile. 165 224 IPR000210 GO:0005515
Trre1g01101 328 Pfam BTB/POZ domain 158 261 IPR000210 GO:0005515
Trre1g01101 328 SUPERFAMILY POZ domain 147 261 IPR011333 -
Trre1g01101 328 SUPERFAMILY TRAF domain-like 12 87 - -
Trre1g01101 328 Gene3D Potassium Channel Kv1.1; Chain A 139 291 IPR011333 -
Trre1g01101 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01101 Trre-Chr1 8328359 8330952 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre1g01101 BTB 4.6e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01101 K10523 - cave:132189340 545.814