Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01100 ATGAGTACCGACTCAATGGAAAAGTTTGATGGTGAAGCTGGATCCATTCTTGTGAATGAACTGAATGCAACATTCGCTTCGGGTAAAACACGAAGTTACGAATGGAGAATTTCGCAATTGAACCAACTTTCTAAGCTTTTGAACTTTCACGAACAAGAAATCGTCGATGCTCTTCGTAATGACATCGATAAACCCCCGCTCGAAACTGTGGCTTACGAGATTTCTATGTTGAAAAACTCATGTAAAAATGCAATCAAGGAATTGAAGCATTGGATGGCTCCAGAAAAGGTCAAAACATCACTCACAACTTTTCCTTCTTCAGCTGAAATAGTATCTGAACCACTTGGAGTTGTTTTGGTTATCTCTGCATGGAACTATCCATTTTTGCTATCACTTGATCCAGTCATTGGAGCTATTGCAGCCGGTAATGTTGTGGTCTTAAAACCATCGGAAATTGCTCCAGCCACATCATCATTGCTCGCAAAACTATTGGGGGAATACATGGATAACTCATCTATAAGAGTTGTTGAGGGAGCAGTTGATGAAACATCTGCATTACTGCAACAAAAGTGGGACAAAATTTTCTACACAGGTAATGGAAAAGTGGCACGCATAGTGATGGCTGCTGCTGCTAAGAACCTTACACCAGTTGTGTTGGAGCTTGGAGGAAAATCACCGGTTATTGTTGATTCAGATATCAACTTACAGGTGGCAACTAGAAGAATAATTGCTGGAAAATGGGGTTGCAATAATGGGCAAGCTTGCATTTCTCCGGATTATATTATAACTACAAAAGACTATGCCCCTAAGTTGGTGGATGCTCTGAGGACTGAATTGGAGAGTTTTTATGGAACGAATCCATTGGAATCAAAAGATTTGTCTCGTATTGTAAACTCAAACCATTTTGCTCGCTTGTTAAAGCTTTTGCAAGATGATAAAGTTTCTGGTAAAATTGTTTATGGAGCTAAAGTGAATGAAAGCAAATTGCGGATTAGCCCTACTATTCTATTGGATGTTCCGCGAGATTCTCTGATAATGAGTGAGGAGATATTCGGTCCATTACTTCCCATCATCACGGTTGATAATCTAGAAGAAAGCTTTGATGTGATAAATTCAGGATCAAAACCTCTTGCTGCATATTTATTTACAAACAATAAGAAACTCAAGGAGCGGTTTGTTAAATCTGTTTCTGCTGGTGGTTTGGTCATCAATGACACTACTTTGCATCTTGCAGTTAAAACTTTGCCTTTTGGTGGAGTAGGAGACAGTGGACTTGGTGCATACCATGGAAAATTCTCATTTGATGCATTTAGCCATAAAAAAGCAGTTTTATATCGCAGTTTTTTTGGTGATGCTTCTATAAGGTATCCACCATATACCAAGACAAAGATGAGATTGTTGAAGGCTCTCATGACCGGTGGCTTACTAGCTATAATTAATGCCATATTTGGAAGGTCTTAG 1461 0.3915 MSTDSMEKFDGEAGSILVNELNATFASGKTRSYEWRISQLNQLSKLLNFHEQEIVDALRNDIDKPPLETVAYEISMLKNSCKNAIKELKHWMAPEKVKTSLTTFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNVVVLKPSEIAPATSSLLAKLLGEYMDNSSIRVVEGAVDETSALLQQKWDKIFYTGNGKVARIVMAAAAKNLTPVVLELGGKSPVIVDSDINLQVATRRIIAGKWGCNNGQACISPDYIITTKDYAPKLVDALRTELESFYGTNPLESKDLSRIVNSNHFARLLKLLQDDKVSGKIVYGAKVNESKLRISPTILLDVPRDSLIMSEEIFGPLLPIITVDNLEESFDVINSGSKPLAAYLFTNNKKLKERFVKSVSAGGLVINDTTLHLAVKTLPFGGVGDSGLGAYHGKFSFDAFSHKKAVLYRSFFGDASIRYPPYTKTKMRLLKALMTGGLLAIINAIFGRS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01100 486 PIRSF ALDH 2 480 IPR012394 GO:0006081
Trre1g01100 486 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 219 226 IPR029510 GO:0016491
Trre1g01100 486 FunFam Aldehyde dehydrogenase 223 423 - -
Trre1g01100 486 Coils Coil 40 60 - -
Trre1g01100 486 FunFam Aldehyde dehydrogenase 22 226 - -
Trre1g01100 486 Pfam Aldehyde dehydrogenase family 27 443 IPR015590 GO:0016491
Trre1g01100 486 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 23 441 IPR016162 GO:0016491
Trre1g01100 486 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 223 423 IPR016163 GO:0016620
Trre1g01100 486 SUPERFAMILY ALDH-like 20 458 IPR016161 GO:0016491
Trre1g01100 486 PANTHER ALDEHYDE DEHYDROGENASE 16 473 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01100 Trre-Chr1 8319510 8323703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01100 9 486 Aldehyde Dehydrogenase Gene Family AT4G34240 68.201 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01100 K00128 - gmx:100816594 800.045