Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01097 ATGTCAAAGTCTCCTTCTTCTGAACAACAAAGATCCACTTATTCTGATTCTCAGCCCATGGAATACAATGAGGAAACAGGAATGGACGATCCAGAGTTTACAATGGCAACAGTTGCTAATTTTTTGGAGCAACTGCACGCCAACATGTCATCACCACATGAGAAAGAACTTATAACAGGACGATTATTAGGTGTTTCCAGGAGAAGAAAGGAGTCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGCTCATAAACATTCTCAGAAATGGAACCCCTCCTGCAAAAGTTAATGTAGCTTCCACTCTGAGTATCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCAGTTTTAAAATATGAATCCACTGATGCCAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCTGGTGGTCTTTCAGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAAGTGTGGTTCCAACCTTATGGAGTCAACTAAATCCACAAAACAAGGAAGACAAAGCTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTATGTGGGGAAAAGGATGATTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATTGTGGGTCTCTTGTCTTCAGATAATTCTTTTTCTCAGTCGAATGCAGCTTCCCTGTTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGTTTTACTTCGACTTATTGGTCAGAAAAATGACATTTCTGTGCGAGCCAGTGCTGCCGATGCCCTGGAGGCTCTTTCTTCAAAGTCTACCGAGGCTAAAAAGGCTATTGTTAATGAAGATGGTGTTCCAATCCTTATCGGAGCTATTGTTGCCCCTTCAACAGAGTGTATGCGAGGTGATGGTGGTCGGGCCTTGCAAGAGCATGCAACTCGAGCTTTAGCCAACATCTACGGGGGCATGTCTGCTTTAATAATATATCTTGGAGAACTTTCCCATTCTCCTCGCCTTGCTGCACCAGTTGGTGATATAATTGGTGCACTTGCTTATGCACTCATGGTATTTGTTGAAAACCCTGACGTTGGTGAGGAACATTTTGATGCAACTCAGATAGAGGATAAACTAGTAACTCTTTTAAAGCCTAGAGACAACAAGCTGATTCAAGAGCGTGTTCTCGAGGCCATGGCTAGCCTTTATGGAAATGTCTATCTATCAAAGTGGCTCGTTCAAGCAGATTCAAAAAAGGTTCTCACTGGACTTATAACTATGGCTGCTCCTGATGTGCAAGAGTATCTGATACTTTCACTGACAAGCTTGTGTTGTGAAAGGATTGGAATATGGGAGGCCATAAAAAAACGCGAAGGTATCCAATTGCTGATATCATTGGTGGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAATTGTTAGCGATCTTAACCCACCAGGTTGATGACAGCAAATGGGCAATCACTGCTGCTGGAGGAATTCCGCCATTGGTGCAGTTGTTGGAGACAGGATCACAAAAAGCAAGAGAGGAAGCGGCTAATGTTCTTTGGAGTTTGTGCTGCCACAGTGAAGATATCCGTGCCTGTGTTGAAAGTGCTGGAGCCATACCAGCATTTTTGTGGCTTCTCAAGAGTGGTGGATCAAAAGGACAAGAAGCTTCTGCCATGGCACTGACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAACCAGCTATTAGCATTGCTCCTAGGGGACTCTACAGGCTCAAAGGTCCATATAATTCGGGTTTTAAGTCATGTGCTTTCTATTGCTTCACAGAAGGATCTCCTTCAGAAGGGATCTGCAGCCAATAAAGGACTGAGTTCTCTTGTTCAAGTTCTCAATTCATCAAATGCGGAAACCCAAGAATATGCAGCTTCAGTCCTTGCTGATTTATTTATCACAAGACAAGACATTTGTGATAGTCTTGCAACGGATGAGAGCGTTCTTCCTTGCATGATGAAGCTTTTGAGTAGCAAAACTCAAGGTGTTGCCATGCAGTCTGCTCGAGCCTTATGTGCTCTGTCTCGTCCAACCAAGAACAAAGCTGCAAATATGATCTCTTATATTTTAGAGGGTGATGTTGAGCCACTAATCAAATTAGCTAAATCATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCCGTTGAAGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGAACCTCAGAAGGTAAACAAAATGCATCACGCGCACTTCATCAATTACTGAAGCAGTTTCCAGTAGGTGACGTTCTCAAGGGCAATTCTCAATGCCGTTTCACTGTGCTTGCACTTGTTGAATCATTAAGAGTTATGGATATGGATGGAACTGATGCTGCAGATACTTTAGGAGCAATTGCACTGCTCGTTAGGACTAAACAGGGTGTCAACTTAACTTACCCTCCGTGGTTAGCTCTGGGTGAAATACTGTCAAGCTTAGAACTTCTCATCTACTGTTTAGCTGAGGGACCTCCCCTTTTGCAAGACAAGGCAATTGAAATTCTCTCTAGGCTTTGTGGGGATCAGCCAGCTGTTCTTGGTGATTTATTATTTGCTAAATCCAGATCCATTGTTTCATTGGCTAATAGAATAATAAACTCCTCAAGTTCAGAAGTGAAAGTTGGTGGAGCTGCCTTACTAATTTGTGCTGCTAAAGAGAAGAAAGGGCTTTCAATGGATTTACTCGACTCTTCTGGTTATCTAAAACCACTAATATATTCATTAGTTGATATGGTGAAGCAGAGTTGTAGCTGTTCTTCATTAGATATTGAAGTATTCACCACCAAAGGTTTTATGGAGAGGAATGCATTTCAAGAAGTTGACGTGTTTGATATTCCTGATCCGGCTACAGTCTTGGGAGGTACTGTTGCACTGTGGTTGCTCTCAGTTATTGCTTCTTTTCATTCGAAGAGCAAGCTCACAGTTATGGAAGCTGGTGGACTTGAAGCTCTCTGTAACAAACTTGTGAAACATACTTCAAATCCACAGGCAGAATATGAGGATACCGAAGGAATATGGATCAGTGCCTTGTTCTTGGCCATTTTGTTTAAAGATGCAGACATCATTCTATCACCTGCAACGATGAACATTATACCTACTATAGCTCTTCTGCTAAGATCTGATGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAATGGTAACAAGGGGATAAATCTTGTCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATTATTGGGCATATGGAATCAGATATGCCAAATCTCGTGGCTTTATCAGAAGAATTTTCTTTGGTTCCAAACCCTGATCAAATAGTTTTGGATACCCTTTTTGAAATTGAAGATGTAAGATTAGGGTCTACTGCCCGGAAATCTATACCCCTCTTAGTGGACCTCTTAAGACCAATACCAGAAAGGCCTAATGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAATGATACAAACAAATCAATTCTGGCAGAAGCTGGATCTCTGGAGGCTTTGAACAAATACCTTTCATTGAGCCCTCAAGACTCAACTGAGACTGCTATTACAGAATTACTGAGAATATTATATTGTAACTCTGACCTCATTAATCATGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGGGCAATTCATGAACTCTTTGATGCCGACTATATCAGAGATTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGATATGCTTAACACAACATCAGGGAATGAGCAGGAAGCTGCTCTCATGGTCTTGATCAAGTTAACATCAGGAGATTCGTCAAAAGCATCCGTTTTTACTGACGTGGAAGGGAATCCACTTGAAAGTTTATACAAAGTATTGTCTTCTGCTTCTTCTGTGGAACTGAAGACCCATGCTGCACATCTCTGCTATGCTCTTTTTGGTAATAGCAAGATCAGAGCAAACCCAGTTGCCTCAGAGTGTATGAAACCCCTTATATCATTAATGCAGTCTAGTTCCGAGACAGCAATAGAATACGGGGTTTGTGCTTTTGATAGATTGTTGGGAGATGAACAGCAGGTAGAGCTTGCAGCAGCCTATAATGTTGTGGATCTCCTTGTTGGCTTGGTTTCTGGTGGGAACTATCAGCTTATTGAGGCCACTATATCTGCTCTAACTAAGTTGGCAAAGGACAGGACTCCTAGCAAACATGACATGGTCAAAGCTGGCATTATTGATAATTGTCTCAAGTTATTTCAATCAGCACCTAGCTCACTCTGTTCCACAATTGCTGAGCTTTTTCGCATTTTAACTAATAGTGTTGCAATTGCTAGAAGTTCAGAAGCTGCAGAAATAGTAGAACCCCTTTTTAATGTTTTGCTCCGTCAGGATTTCAACTTATGGGGACAGCACAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCGCAAAGTCTTGCATCCTTAAAGCTTACTCCTAGCCAAGTTATTGAACCCTTGATTTCTTTTCTTCAATCACCATCGGCAACTATTCAGCAGCTTGGCACGGAACTGTTATCTCATCTTCTTGCACAGCAACACTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTTGTACGGCTTGCAGGAATTCGAATTTTAAATTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCACGAGCTGGCCAAAGGCCGTTGCTGATGCGGGAGGTATTTATGAGCTTGCAAAAGTTATTATTCAAGATGATCCTCAGCCATCACATGCTCTCTGGGAATCAGCTGCTTTAGTTCTCTCAAATGTCTTACATTCCAATACTGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTCTTGCACTCAACACTTGAGAGTACTATTAGCATAGCGCTAAATGCTTTAATAGTTTATGAAAGAAGCTATGGTTCAAGTGCTGAAGATATGATGGAAGCTGGAGCTATGGATGCTCTGTTGCACCTTATAAGATCTCATCAATGTGAAGAAGCGTCTGGTGGCTTACTTGAAAATTTATTTAACAATGTGAGAATACGGGAGATGAAGATATCTAAGTATGCTATAGCGCCTTTATCCCAATATCTGTTAGATCCACACACCAGATCACAGTCTGGCAAGCTTCTTGCTGCCTTAGCTCTGGGGAATCTTTCCCAGCATGAACGCCATGCTAGAGCTAATGACTCTGTATCTGCATGTCGTGCATTGATAAGTTTACTAGAGGACCAGCCAACTGAAGAAATGACGATGGTGGCTATATGCGCGTTACAAAACTTTGTCATGAACAGCAGGACCAATAGACGTGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTACTGTTTCCGAATACAGAAGTTGCTAGACAAGCAGCTCTATTGATCAAATTTTTGTTTTCTACCCACACATTACAAGAGTACGTGTCAAATGAGCTGATCAGATCTTTGACAGCTGCACTCGAAAGAGAGTTATGGTCGACTGCCACAATCAACGAGGAGGTTTTGAAAACACTGCATGTGATATTCATCAACTTTCCTAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCAGGGAATGAAGCAGCTCAAGACTCTGTACTTGACACCTTTTTCTTGCTAAAACAATCATGGTCTACCATGCCAATAGATATAGCAAAATCTCAAGCCATTATTGCCGCTGAAGCCATTCCCATCTTGCAAATGCTCATGAAATCCTGCCCACCAAGTTTCCATGAAAGGGCAGATACTCTTCTGCATTGCTTACCTGGTTGTTTGACTGTCACCATTAAACGTGGAAACAATCTCAAGCAAAGTATGGGAAGCACCAATGCATTTTGCCAGTTGACAATAGGGAATGGCCCTCCAAAACAAACCAAGATAGTGAACCATAGTACTTCACCGGAATGGAAAGAAGGTTTCACATGGGCATTTGATGTACCTCCCAAGGGCCAAAAACTCCATATCATATGCAAAAGCAAGAATACTTTTGGAAAGTCAAGTCTTGGAAGAGTCACCATCCAAATTGATAAAGTTGTGACGGAAGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATAGCAACAAAGATGGTTCTTCCCGAACACTTGAAATCGAGATTGTATGGTCTAACAGAATTTCTAATGATGACATTTGA 6411 0.4157 MSKSPSSEQQRSTYSDSQPMEYNEETGMDDPEFTMATVANFLEQLHANMSSPHEKELITGRLLGVSRRRKESRALIGSHAQAMPLLINILRNGTPPAKVNVASTLSILCKDEDLRLKVLLGGCIPPLLSVLKYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTESVVPTLWSQLNPQNKEDKAVEGFITGALRNLCGEKDDYWKATLEAGGVDIIVGLLSSDNSFSQSNAASLLARLMLAFSDSIPKVIDSGAVKVLLRLIGQKNDISVRASAADALEALSSKSTEAKKAIVNEDGVPILIGAIVAPSTECMRGDGGRALQEHATRALANIYGGMSALIIYLGELSHSPRLAAPVGDIIGALAYALMVFVENPDVGEEHFDATQIEDKLVTLLKPRDNKLIQERVLEAMASLYGNVYLSKWLVQADSKKVLTGLITMAAPDVQEYLILSLTSLCCERIGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLAILTHQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGSKGQEASAMALTKLVRVADSATINQLLALLLGDSTGSKVHIIRVLSHVLSIASQKDLLQKGSAANKGLSSLVQVLNSSNAETQEYAASVLADLFITRQDICDSLATDESVLPCMMKLLSSKTQGVAMQSARALCALSRPTKNKAANMISYILEGDVEPLIKLAKSSSVDAAETAVAALANLLFDPFIAVEALAEDVVSALTRVLAEGTSEGKQNASRALHQLLKQFPVGDVLKGNSQCRFTVLALVESLRVMDMDGTDAADTLGAIALLVRTKQGVNLTYPPWLALGEILSSLELLIYCLAEGPPLLQDKAIEILSRLCGDQPAVLGDLLFAKSRSIVSLANRIINSSSSEVKVGGAALLICAAKEKKGLSMDLLDSSGYLKPLIYSLVDMVKQSCSCSSLDIEVFTTKGFMERNAFQEVDVFDIPDPATVLGGTVALWLLSVIASFHSKSKLTVMEAGGLEALCNKLVKHTSNPQAEYEDTEGIWISALFLAILFKDADIILSPATMNIIPTIALLLRSDEVIDKYFAAQAMASLVCNGNKGINLVIANSGAVAGLITIIGHMESDMPNLVALSEEFSLVPNPDQIVLDTLFEIEDVRLGSTARKSIPLLVDLLRPIPERPNAPPVAVRLLISIADGNDTNKSILAEAGSLEALNKYLSLSPQDSTETAITELLRILYCNSDLINHEASTSSLNQLIAVLRLGSRNARYSAARAIHELFDADYIRDSELAKQAIQPLVDMLNTTSGNEQEAALMVLIKLTSGDSSKASVFTDVEGNPLESLYKVLSSASSVELKTHAAHLCYALFGNSKIRANPVASECMKPLISLMQSSSETAIEYGVCAFDRLLGDEQQVELAAAYNVVDLLVGLVSGGNYQLIEATISALTKLAKDRTPSKHDMVKAGIIDNCLKLFQSAPSSLCSTIAELFRILTNSVAIARSSEAAEIVEPLFNVLLRQDFNLWGQHSALQALVNILEKPQSLASLKLTPSQVIEPLISFLQSPSATIQQLGTELLSHLLAQQHFQQDITTKNAVVPLVRLAGIRILNLQQTAIKALEKISTSWPKAVADAGGIYELAKVIIQDDPQPSHALWESAALVLSNVLHSNTDYYFKVPVVVLVKLLHSTLESTISIALNALIVYERSYGSSAEDMMEAGAMDALLHLIRSHQCEEASGGLLENLFNNVRIREMKISKYAIAPLSQYLLDPHTRSQSGKLLAALALGNLSQHERHARANDSVSACRALISLLEDQPTEEMTMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLFPNTEVARQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFINFPKLHISEAATLCIPHLVGALKSGNEAAQDSVLDTFFLLKQSWSTMPIDIAKSQAIIAAEAIPILQMLMKSCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQSMGSTNAFCQLTIGNGPPKQTKIVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKSSLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIVWSNRISNDDI 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01097 2136 SUPERFAMILY ARM repeat 443 796 IPR016024 -
Trre1g01097 2136 SMART arm_5 1290 1330 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 287 336 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 711 751 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1016 1065 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 111 151 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 202 242 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 244 285 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 69 110 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 665 706 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1207 1247 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1376 1416 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1835 1875 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 623 663 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1417 1457 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 502 542 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 752 792 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1747 1791 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 458 500 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1625 1669 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 158 200 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 544 584 IPR000225 GO:0005515
Trre1g01097 2136 SMART arm_5 1459 1499 IPR000225 GO:0005515
Trre1g01097 2136 Gene3D - 34 356 IPR011989 -
Trre1g01097 2136 Gene3D - 1800 2006 IPR011989 -
Trre1g01097 2136 Pfam C2 domain 2009 2108 IPR000008 -
Trre1g01097 2136 Gene3D - 826 1145 IPR011989 -
Trre1g01097 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1174 1218 IPR000225 GO:0005515
Trre1g01097 2136 Gene3D - 1588 1799 IPR011989 -
Trre1g01097 2136 Gene3D C2 domain 2008 2134 IPR035892 -
Trre1g01097 2136 ProSiteProfiles C2 domain profile. 1989 2106 IPR000008 -
Trre1g01097 2136 MobiDBLite consensus disorder prediction 1 28 - -
Trre1g01097 2136 SUPERFAMILY ARM repeat 76 308 IPR016024 -
Trre1g01097 2136 SUPERFAMILY ARM repeat 1612 2006 IPR016024 -
Trre1g01097 2136 CDD C2 2010 2100 - -
Trre1g01097 2136 SUPERFAMILY ARM repeat 853 1126 IPR016024 -
Trre1g01097 2136 Gene3D - 1419 1587 IPR011989 -
Trre1g01097 2136 SUPERFAMILY ARM repeat 1177 1546 IPR016024 -
Trre1g01097 2136 Gene3D - 1167 1418 IPR011989 -
Trre1g01097 2136 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g01097 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Trre1g01097 2136 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Trre1g01097 2136 Gene3D - 632 823 IPR011989 -
Trre1g01097 2136 SUPERFAMILY ARM repeat 322 462 IPR016024 -
Trre1g01097 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Trre1g01097 2136 SMART C2_3c 2009 2105 IPR000008 -
Trre1g01097 2136 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2007 2113 IPR035892 -
Trre1g01097 2136 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 11 2130 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trre1g01097 2136 Gene3D - 369 631 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01097 Trre-Chr1 8291131 8300564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01097 402 790 U-box Gene Family AT3G46510 21.867 4.36e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01097 - - gmx:100796864 3513.78