Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g01093 | ATGGATCATCATCAACACTTCCTCCATCACAACCACCATCAAGACCACCGTACACGATTCGCTCCTCCAATTCCTCAATCACATCACCTCCTCCTTCAACCACCCTCTCTTCCTCATCCTCCACCTCTCTCTCACCGTCCTCCACCACCACCACAACAACCATCTTACAACCCTCCTTTACCTCACCAATCTCCTCAATTCCCTCTTTACCATTCAGATCATCATCCCCGTCTCATCCTTGAACCCACTTGGAACCCTAATCCCGAAGATCGATCCTCCCGAAATTACCCTCCAATTGATTACCATCGCGAATCGCATCACCACCACACCCAAAACCACCGTACTCCACCTTCTTATCCACCACCTATCCGTTACGAACATGATACCTCTTACGGAAGATTGAACACCGAAGTAAACCCTAGGGAAACCTTCGTCTACCGCCACCATGTAACTACCGCTTCTCCCTCCGCATCGAATCTCGCTTATCAGGAACGCGACGACGATAGAATCGATAACAGAAGGTGGTTGAATGATAGAAAACTACACAATTCTTCACCTCCTCATTCACCTTCTTTTCAATTGGTGAATGATGAAATAAAACGAGATTATCATAGTTCTGAAACGGTTAGGTATAGCGGTGGTAGCAATAGTAGTAGATCCAATAGTAGAGACTGTAATCATAATCACAATCACAATCACGGTCGTGAATTCAGTCGAACACCGCCGAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGAATCCAAACGGTAAAACCTAATCATAGGAACCGTGATTATGTTCCTGATTCTAACGTTAATTTCTTCAGGGGTAATAATAGTAAAGATCAACGTGGAGGTTATACAAAGGGTGGTGGTGAAGATAGAAAAAAAGAAAACCCAGTTGAAGAATTTGACATTTCTTTGGAATCAAATGTTCTTGTGGCAAAGCCTATTGTCACTTCCGGTGCGGTTTCTGCTAAACTGTCTTCTGTTGTTAGAATTGCAAATGAAGGCGATGCTTCAGAGAAGAATGAAGGCGATTCTCGTGAGAAAAATGAGGGGGAAGTTTCTGTTGAAGCTAGTGGCACTGGTACTCGTAAATTGGCCTCTAAGATTGTGAAGAAGAAGAAAACTGTTAAAAGAGTGGTGAAAAAAGGTTCTGTTAAAAGTACTAATTCAAATGTGTCGGCTTCACCTTCGTTGGCCAATGAAGTTGGTGGAACTGTGGAAGGAGATAGCGTGACACGGAGCTCGTCCAATGCTGCGTCTGGAACTGTCGAAACTGAAACTTGTTTGGAGGAGAAAATCAATGCTGTTGATAAGGTGGCTGCGCCAGAAGATGAAGGTGATGTATTGGATGAAGATATAAACGTGGGTTTGTCCCTGCTAAGTTCGAAGCCAGAAAGCAGTTCACAAGAAGGTAAGAACGATGAAGATTCTGATATTGGGAAAGAATCCAGGTTTGAAAAAGGTGGAAGTATTCCAGATACTCCATCTTGTGTTTCTAGTAGTTTAGGTAAAAGTAGTTGTTCTGATTGTTTAGATGTGTGTAATTCTGTCCATGACTTGCTTAGCATGACAACTATTGACAAGGCTACTAAGTCATTAAATGGAAGTACTACTGAAATCAATCACTTGGATTGTGGGAACAAGCCATTATGTCAGAGTGAAGTATCTCTATCACCTGGGAACAATATAGATGTAGGATGCTCAGGGAATAGGAATCTTGTAGATGTAGGGAATGAAATGAATTACAATGTCATTTCTGCAGATATTATAAGTACACAGGATTCTGCTGATGACAGTGGCTTCAATTCCAATGATGCTACTAGCTCAGAAGAGAAAATTACTGTTAATGACAGTGGGAATAACGACATTGATGGAGAGGCTTATTGTGAAAAGATGGCTCCTGTGATCAATCAAAATTCTACGTCTGAAGAAAATACAGATACAGCCATCCCTCTGCCAAGTAGTGGAATGGTTGCTTTTTCAAGTTTAGGAGATACTAGGATTCAGGATGGTCATGATTGCCTACAACCTACCAGTGTACTGAAGCAGGGCTCTGATGATAGATCGTCTAGTTTGGAAGAGGGTATCATTGTTCACCAATTTGATATCATTAAAGATGCTGAAAAGCAAGTTTCTCCTGGTGAAGTCCCCTTATCTGCTGAGGATTGTGACATAGATAAAACATTTCCAAATTCTAATATTTCACTCGGATTTGATATAAGGGATACAAGTAAGATAGAAAAGAGAGATGTTAAGACTCGTTTAAATTTTTTGAGTTTGGATTTGGATGATATATCTCTTACTCCAGTTAACCATTCAAATGATACTGATAGAGGCTCACCAATTTTATTGAAGGATCCATGTGCTTCAGAAGTCTTGGATGATTCTATTCAAAGCCTAGATTTTTACTCACTATCCAACCAGGTTGGGGACACTGCTTTATATGGGAAAAGAGCTTTTTCTGAGGCTGAGTTTTGTGTTGCAAATAATGACAGTGATGATGAAAATAAGGTTTCACCCGTTTCTAAGAGGAAAAAAGTCACTTCTAGTGACCCAAATTTAACTCAATTTCAAATGGAATTTAGTGATTCAATTGTGGCTACCACATCTAGTGCAGAAGTTCCTATCATTTCCAGTGATAGCCAAGAACATATGAAAGATGATGTTGCATTGTCAAGCATGGGTATGGATATTCAGTCTATGCCTTATTCAGATGGTATTGCTAAATCGTCTGACTGTATTTTCACTGGAGGATCATTTGAGTCTACAGATGTAAATAGGGAAACCAAGAGTTCTGAGCATTTGGAATTGCAGGTATCTACACAATGTGAGGACTTGGCAATTCCAAATGTTCCATTTTCAGAGCAGAAAGATAATGTTACTCCAATCGTGCCTATAAGTAATACTCAAACCGACATTTTGGTTATTGGAAATATCATGGGGGAAAAGACAGATTCACATGCTTCTGAAAACAATTACCATTATGGAGATGTTGTGTCTCCAACGGCTGATATGCTATCTAATGATCTCGATATGAAGGGTGATCTACTTGCTCAGGAGAGCCTTATGCCCTGCCCTGCTGATGGTGATGGAGCCACTATCAGTAACTCAAATAATGAATTGCCTGAGGATTTGCCTGATCCTTTATCAGATATGTATTCTCACGGGATGACATCTGAATTGCCAGATAGAATGATTACTGAATCTACAGCAATGGATATTGACGAAAACATTTGTGGCAATGAAGAAAATCCAGATTGTGTATCTATGGTAAAACATGGTTCTGACTTGGATACTTCATCAATACAGCATACTGAAAAAACTCCGAAATCAGATCATGCAATTGAATGTAGTGACCAAATCTCAAGGAATATAATGCCAAAACCAACCCAAGTTTATTCTAAAGTTACACCTCTTGGTCTAAATTCATCATGTTCTGGATTAAATGGAAGCAAAAATCAGCCAGGTGGTGTCATCCTTAAAGCTTCCAAGGGTAATTCTTTTGCCCTTCCGAAGTCAAAGTCAAAGACTCCTGCCTCTTCAATCAATGCATCCAAATCTCGAACTTGGCATCGGACAGATAATAATCCTCCCGCTTCTCTTCCTAGAGTCAATATTTCAGCAGGAATAGATGCTTCCAAAAGGCCAATTCTCCAAAGGAAAAATAACTTTCAAAATACTTCTTACATCCGTAAAGGTAACAGTCTTGTTAGGAATCCTAGTCCAGTTTCTGCTATACCTCAAATGTTCTCTACCAGTCTTGTGAGGAGACCTACTCCAGTTTCTTCTATACCTCAAATCTCCTCTATCAATCCGCTACCTTTGGGCTTGGGGGAAATACACAAGGGTACTAAACCTGAAAGCAGGGCTGATTTAACAGATCAGCCAATCTACTCAAATCAGGGGAAAAACATATCTTCCCCATTGTTAGAACCTCCTTCCAGCGGCTTCTGTGAAAACGCATCTGATCCTAGGAAGTTCATTGAAACTAATGATGCACCAGCCTCCTCTGAAGATGTACTAAAACAATATGAAACTCCTGAAAATCAAACTGGTCCATCTGGCAATGTGAATTTTAATGCTGAAGCAAATGATGGAAATATTTCTTCTTTGAACTCAAAAAGAATAGTTTATGTAAAGCCAAAAACAAATCAATTGGTTGCAACTTCGAGTTCTTGTGATATTATTGTCTCTACTGATGACAAAGGCCAAACAGCCATCTCTGATAGCTATTACAAGAGGAAAAAAAATCAATTGGTTAGGACTACATTTGAAAACCATGTCAACCAGACAGTTGCAATGCCCAATAACATTGTAAATTCTGACGGTCAAGGTGACAGTAAAGTAATTTGCAAGAGGAGGTCTACCAAGAGGCGGTCACATAAGGTTGCTGGGATTTCGAGAAAATCTTCAAGAGCATCACTAGTGTGGACACTTGGTAGCAAAAATTCTTCTGGAAATGACAGGAACTCCCGGAATTATCAAAAGGTTTTACCGCACTTGTTTCCATGGAAAAGAACGACATATTTAAGAAGCTTCATTAATAATTCTGCTTCAAGCTTCAATAGTGGTTCCTTATCTGCAGTCGGTAAGAAATTGCTTCAATTGAGAAAGAGGGATACTGTATACACCAGGTCAAACCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCAAAATCCATCGAGAAGCACTCAAAGAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAGGAAGAAGAGAGAGAAGAAAGACCCAGCTCGTATTGGTCCTCAGACAAAGAGAGAACGTATATTTCGTGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACGCTTCAGAGGATTGCAGATGATGAATCCCCGTCCTCTGCCTCAACCAATTTAGGTTTGGCTTCCAAAAAAGGTTACATTCCAAGGAGATTAGTGATTGGAAATGAAGAATATGTTCGAATTGGCAATGGGAACCAACTTATCAGAGACCCAAAGAAACGAACTAGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGTAAGCAGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGATGGAGGGAAGTGTCCTTACATTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTTCTGAAGGGTTTATGTTCCACTCCAAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCTGATTGTTCATACTTTTTGCAAGGCCTATGCTCAAACGAAAATTGTCCATATAGACATGTCAATGTGAACCCTAAGGCACCTATTTGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCAAGTTTTGAAGCAACAGGGACCTGTACTCAAGGAACCAAATGCAAGCTTCACCACCCGAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCCGGTGATCAGAACAACGGCAGAGGACGCTACTTTGGTTCTATCTCTGCTGATGTTTCTGAACCTTGGATTATGGTGGCTCCCAAATTTCCTCAACAGCATGAGGAACCTGAAAGTGAACTAACCGAATACATCAGTCTTGATGCGTATGAAGAAGAGGAAGATGCAGTTGACGAATCATTTGAGCTATCAACATTTTGTGACAATGATACCACGGATCTTCAGTTGGATACTTCTGATGAACTCATCAAACCTGTCTCTATAATAATGAAGTTTGGTTTGCAATCTCAGTCTAGAAGCCTTCAAGCTTAG | 5853 | 0.4042 | MDHHQHFLHHNHHQDHRTRFAPPIPQSHHLLLQPPSLPHPPPLSHRPPPPPQQPSYNPPLPHQSPQFPLYHSDHHPRLILEPTWNPNPEDRSSRNYPPIDYHRESHHHHTQNHRTPPSYPPPIRYEHDTSYGRLNTEVNPRETFVYRHHVTTASPSASNLAYQERDDDRIDNRRWLNDRKLHNSSPPHSPSFQLVNDEIKRDYHSSETVRYSGGSNSSRSNSRDCNHNHNHNHGREFSRTPPKKQIQKKSALLRIQTVKPNHRNRDYVPDSNVNFFRGNNSKDQRGGYTKGGGEDRKKENPVEEFDISLESNVLVAKPIVTSGAVSAKLSSVVRIANEGDASEKNEGDSREKNEGEVSVEASGTGTRKLASKIVKKKKTVKRVVKKGSVKSTNSNVSASPSLANEVGGTVEGDSVTRSSSNAASGTVETETCLEEKINAVDKVAAPEDEGDVLDEDINVGLSLLSSKPESSSQEGKNDEDSDIGKESRFEKGGSIPDTPSCVSSSLGKSSCSDCLDVCNSVHDLLSMTTIDKATKSLNGSTTEINHLDCGNKPLCQSEVSLSPGNNIDVGCSGNRNLVDVGNEMNYNVISADIISTQDSADDSGFNSNDATSSEEKITVNDSGNNDIDGEAYCEKMAPVINQNSTSEENTDTAIPLPSSGMVAFSSLGDTRIQDGHDCLQPTSVLKQGSDDRSSSLEEGIIVHQFDIIKDAEKQVSPGEVPLSAEDCDIDKTFPNSNISLGFDIRDTSKIEKRDVKTRLNFLSLDLDDISLTPVNHSNDTDRGSPILLKDPCASEVLDDSIQSLDFYSLSNQVGDTALYGKRAFSEAEFCVANNDSDDENKVSPVSKRKKVTSSDPNLTQFQMEFSDSIVATTSSAEVPIISSDSQEHMKDDVALSSMGMDIQSMPYSDGIAKSSDCIFTGGSFESTDVNRETKSSEHLELQVSTQCEDLAIPNVPFSEQKDNVTPIVPISNTQTDILVIGNIMGEKTDSHASENNYHYGDVVSPTADMLSNDLDMKGDLLAQESLMPCPADGDGATISNSNNELPEDLPDPLSDMYSHGMTSELPDRMITESTAMDIDENICGNEENPDCVSMVKHGSDLDTSSIQHTEKTPKSDHAIECSDQISRNIMPKPTQVYSKVTPLGLNSSCSGLNGSKNQPGGVILKASKGNSFALPKSKSKTPASSINASKSRTWHRTDNNPPASLPRVNISAGIDASKRPILQRKNNFQNTSYIRKGNSLVRNPSPVSAIPQMFSTSLVRRPTPVSSIPQISSINPLPLGLGEIHKGTKPESRADLTDQPIYSNQGKNISSPLLEPPSSGFCENASDPRKFIETNDAPASSEDVLKQYETPENQTGPSGNVNFNAEANDGNISSLNSKRIVYVKPKTNQLVATSSSCDIIVSTDDKGQTAISDSYYKRKKNQLVRTTFENHVNQTVAMPNNIVNSDGQGDSKVICKRRSTKRRSHKVAGISRKSSRASLVWTLGSKNSSGNDRNSRNYQKVLPHLFPWKRTTYLRSFINNSASSFNSGSLSAVGKKLLQLRKRDTVYTRSNRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREKKDPARIGPQTKRERIFRVGSVRYRMDPSRRTLQRIADDESPSSASTNLGLASKKGYIPRRLVIGNEEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDDGGKCPYIHDPSKIAVCTKFLKGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNENCPYRHVNVNPKAPICEGFLKGYCADGNECRKKHSYVCPSFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDQNNGRGRYFGSISADVSEPWIMVAPKFPQQHEEPESELTEYISLDAYEEEEDAVDESFELSTFCDNDTTDLQLDTSDELIKPVSIIMKFGLQSQSRSLQA | 1950 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 208 | 223 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 1172 | 1206 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 1287 | 1310 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 34 | 65 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 339 | 357 | - | - | |
Trre1g01093 | 1950 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1761 | 1787 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 1828 | 1859 | - | - | |
Trre1g01093 | 1950 | FunFam | Zinc finger CCCH domain-containing protein 7 | 1789 | 1850 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 339 | 364 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 224 | 243 | - | - | |
Trre1g01093 | 1950 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1788 | 1815 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 472 | 492 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 1 | 121 | - | - | |
Trre1g01093 | 1950 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1705 | 1735 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | Gene3D | - | 1733 | 1788 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 1831 | 1845 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 386 | 404 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 384 | 430 | - | - | |
Trre1g01093 | 1950 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1816 | 1838 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 1172 | 1208 | - | - | |
Trre1g01093 | 1950 | SMART | c3hfinal6 | 1761 | 1786 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | SMART | c3hfinal6 | 1705 | 1734 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | SMART | c3hfinal6 | 1735 | 1759 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | SMART | c3hfinal6 | 1815 | 1837 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | SMART | c3hfinal6 | 1788 | 1814 | IPR000571 | GO:0046872 | |
Trre1g01093 | 1950 | PANTHER | CCCH ZINGC FINGER | 232 | 1936 | - | - | |
Trre1g01093 | 1950 | Gene3D | - | 1789 | 1851 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 464 | 501 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 206 | 246 | - | - | |
Trre1g01093 | 1950 | FunFam | zinc finger CCCH domain-containing protein 3 | 1736 | 1787 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 259 | 300 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 598 | 625 | - | - | |
Trre1g01093 | 1950 | MobiDBLite | consensus disorder prediction | 411 | 428 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g01093 | Trre-Chr1 | 8243316 | 8251920 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g01093 | 1711 | 1870 | C2H2 Transcription Factor Family | AT2G32930 | 30.120 | 6.64e-07 | 52.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Trre1g01093 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g01093 | - | - | mtr:25482449 | 2572.73 |