Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01093 ATGGATCATCATCAACACTTCCTCCATCACAACCACCATCAAGACCACCGTACACGATTCGCTCCTCCAATTCCTCAATCACATCACCTCCTCCTTCAACCACCCTCTCTTCCTCATCCTCCACCTCTCTCTCACCGTCCTCCACCACCACCACAACAACCATCTTACAACCCTCCTTTACCTCACCAATCTCCTCAATTCCCTCTTTACCATTCAGATCATCATCCCCGTCTCATCCTTGAACCCACTTGGAACCCTAATCCCGAAGATCGATCCTCCCGAAATTACCCTCCAATTGATTACCATCGCGAATCGCATCACCACCACACCCAAAACCACCGTACTCCACCTTCTTATCCACCACCTATCCGTTACGAACATGATACCTCTTACGGAAGATTGAACACCGAAGTAAACCCTAGGGAAACCTTCGTCTACCGCCACCATGTAACTACCGCTTCTCCCTCCGCATCGAATCTCGCTTATCAGGAACGCGACGACGATAGAATCGATAACAGAAGGTGGTTGAATGATAGAAAACTACACAATTCTTCACCTCCTCATTCACCTTCTTTTCAATTGGTGAATGATGAAATAAAACGAGATTATCATAGTTCTGAAACGGTTAGGTATAGCGGTGGTAGCAATAGTAGTAGATCCAATAGTAGAGACTGTAATCATAATCACAATCACAATCACGGTCGTGAATTCAGTCGAACACCGCCGAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGAATCCAAACGGTAAAACCTAATCATAGGAACCGTGATTATGTTCCTGATTCTAACGTTAATTTCTTCAGGGGTAATAATAGTAAAGATCAACGTGGAGGTTATACAAAGGGTGGTGGTGAAGATAGAAAAAAAGAAAACCCAGTTGAAGAATTTGACATTTCTTTGGAATCAAATGTTCTTGTGGCAAAGCCTATTGTCACTTCCGGTGCGGTTTCTGCTAAACTGTCTTCTGTTGTTAGAATTGCAAATGAAGGCGATGCTTCAGAGAAGAATGAAGGCGATTCTCGTGAGAAAAATGAGGGGGAAGTTTCTGTTGAAGCTAGTGGCACTGGTACTCGTAAATTGGCCTCTAAGATTGTGAAGAAGAAGAAAACTGTTAAAAGAGTGGTGAAAAAAGGTTCTGTTAAAAGTACTAATTCAAATGTGTCGGCTTCACCTTCGTTGGCCAATGAAGTTGGTGGAACTGTGGAAGGAGATAGCGTGACACGGAGCTCGTCCAATGCTGCGTCTGGAACTGTCGAAACTGAAACTTGTTTGGAGGAGAAAATCAATGCTGTTGATAAGGTGGCTGCGCCAGAAGATGAAGGTGATGTATTGGATGAAGATATAAACGTGGGTTTGTCCCTGCTAAGTTCGAAGCCAGAAAGCAGTTCACAAGAAGGTAAGAACGATGAAGATTCTGATATTGGGAAAGAATCCAGGTTTGAAAAAGGTGGAAGTATTCCAGATACTCCATCTTGTGTTTCTAGTAGTTTAGGTAAAAGTAGTTGTTCTGATTGTTTAGATGTGTGTAATTCTGTCCATGACTTGCTTAGCATGACAACTATTGACAAGGCTACTAAGTCATTAAATGGAAGTACTACTGAAATCAATCACTTGGATTGTGGGAACAAGCCATTATGTCAGAGTGAAGTATCTCTATCACCTGGGAACAATATAGATGTAGGATGCTCAGGGAATAGGAATCTTGTAGATGTAGGGAATGAAATGAATTACAATGTCATTTCTGCAGATATTATAAGTACACAGGATTCTGCTGATGACAGTGGCTTCAATTCCAATGATGCTACTAGCTCAGAAGAGAAAATTACTGTTAATGACAGTGGGAATAACGACATTGATGGAGAGGCTTATTGTGAAAAGATGGCTCCTGTGATCAATCAAAATTCTACGTCTGAAGAAAATACAGATACAGCCATCCCTCTGCCAAGTAGTGGAATGGTTGCTTTTTCAAGTTTAGGAGATACTAGGATTCAGGATGGTCATGATTGCCTACAACCTACCAGTGTACTGAAGCAGGGCTCTGATGATAGATCGTCTAGTTTGGAAGAGGGTATCATTGTTCACCAATTTGATATCATTAAAGATGCTGAAAAGCAAGTTTCTCCTGGTGAAGTCCCCTTATCTGCTGAGGATTGTGACATAGATAAAACATTTCCAAATTCTAATATTTCACTCGGATTTGATATAAGGGATACAAGTAAGATAGAAAAGAGAGATGTTAAGACTCGTTTAAATTTTTTGAGTTTGGATTTGGATGATATATCTCTTACTCCAGTTAACCATTCAAATGATACTGATAGAGGCTCACCAATTTTATTGAAGGATCCATGTGCTTCAGAAGTCTTGGATGATTCTATTCAAAGCCTAGATTTTTACTCACTATCCAACCAGGTTGGGGACACTGCTTTATATGGGAAAAGAGCTTTTTCTGAGGCTGAGTTTTGTGTTGCAAATAATGACAGTGATGATGAAAATAAGGTTTCACCCGTTTCTAAGAGGAAAAAAGTCACTTCTAGTGACCCAAATTTAACTCAATTTCAAATGGAATTTAGTGATTCAATTGTGGCTACCACATCTAGTGCAGAAGTTCCTATCATTTCCAGTGATAGCCAAGAACATATGAAAGATGATGTTGCATTGTCAAGCATGGGTATGGATATTCAGTCTATGCCTTATTCAGATGGTATTGCTAAATCGTCTGACTGTATTTTCACTGGAGGATCATTTGAGTCTACAGATGTAAATAGGGAAACCAAGAGTTCTGAGCATTTGGAATTGCAGGTATCTACACAATGTGAGGACTTGGCAATTCCAAATGTTCCATTTTCAGAGCAGAAAGATAATGTTACTCCAATCGTGCCTATAAGTAATACTCAAACCGACATTTTGGTTATTGGAAATATCATGGGGGAAAAGACAGATTCACATGCTTCTGAAAACAATTACCATTATGGAGATGTTGTGTCTCCAACGGCTGATATGCTATCTAATGATCTCGATATGAAGGGTGATCTACTTGCTCAGGAGAGCCTTATGCCCTGCCCTGCTGATGGTGATGGAGCCACTATCAGTAACTCAAATAATGAATTGCCTGAGGATTTGCCTGATCCTTTATCAGATATGTATTCTCACGGGATGACATCTGAATTGCCAGATAGAATGATTACTGAATCTACAGCAATGGATATTGACGAAAACATTTGTGGCAATGAAGAAAATCCAGATTGTGTATCTATGGTAAAACATGGTTCTGACTTGGATACTTCATCAATACAGCATACTGAAAAAACTCCGAAATCAGATCATGCAATTGAATGTAGTGACCAAATCTCAAGGAATATAATGCCAAAACCAACCCAAGTTTATTCTAAAGTTACACCTCTTGGTCTAAATTCATCATGTTCTGGATTAAATGGAAGCAAAAATCAGCCAGGTGGTGTCATCCTTAAAGCTTCCAAGGGTAATTCTTTTGCCCTTCCGAAGTCAAAGTCAAAGACTCCTGCCTCTTCAATCAATGCATCCAAATCTCGAACTTGGCATCGGACAGATAATAATCCTCCCGCTTCTCTTCCTAGAGTCAATATTTCAGCAGGAATAGATGCTTCCAAAAGGCCAATTCTCCAAAGGAAAAATAACTTTCAAAATACTTCTTACATCCGTAAAGGTAACAGTCTTGTTAGGAATCCTAGTCCAGTTTCTGCTATACCTCAAATGTTCTCTACCAGTCTTGTGAGGAGACCTACTCCAGTTTCTTCTATACCTCAAATCTCCTCTATCAATCCGCTACCTTTGGGCTTGGGGGAAATACACAAGGGTACTAAACCTGAAAGCAGGGCTGATTTAACAGATCAGCCAATCTACTCAAATCAGGGGAAAAACATATCTTCCCCATTGTTAGAACCTCCTTCCAGCGGCTTCTGTGAAAACGCATCTGATCCTAGGAAGTTCATTGAAACTAATGATGCACCAGCCTCCTCTGAAGATGTACTAAAACAATATGAAACTCCTGAAAATCAAACTGGTCCATCTGGCAATGTGAATTTTAATGCTGAAGCAAATGATGGAAATATTTCTTCTTTGAACTCAAAAAGAATAGTTTATGTAAAGCCAAAAACAAATCAATTGGTTGCAACTTCGAGTTCTTGTGATATTATTGTCTCTACTGATGACAAAGGCCAAACAGCCATCTCTGATAGCTATTACAAGAGGAAAAAAAATCAATTGGTTAGGACTACATTTGAAAACCATGTCAACCAGACAGTTGCAATGCCCAATAACATTGTAAATTCTGACGGTCAAGGTGACAGTAAAGTAATTTGCAAGAGGAGGTCTACCAAGAGGCGGTCACATAAGGTTGCTGGGATTTCGAGAAAATCTTCAAGAGCATCACTAGTGTGGACACTTGGTAGCAAAAATTCTTCTGGAAATGACAGGAACTCCCGGAATTATCAAAAGGTTTTACCGCACTTGTTTCCATGGAAAAGAACGACATATTTAAGAAGCTTCATTAATAATTCTGCTTCAAGCTTCAATAGTGGTTCCTTATCTGCAGTCGGTAAGAAATTGCTTCAATTGAGAAAGAGGGATACTGTATACACCAGGTCAAACCGTGGGTTTTCTCTTTGGAAATCCAAAGTTTTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCAAAATCCATCGAGAAGCACTCAAAGAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAGGAAGAAGAGAGAGAAGAAAGACCCAGCTCGTATTGGTCCTCAGACAAAGAGAGAACGTATATTTCGTGTTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACGCTTCAGAGGATTGCAGATGATGAATCCCCGTCCTCTGCCTCAACCAATTTAGGTTTGGCTTCCAAAAAAGGTTACATTCCAAGGAGATTAGTGATTGGAAATGAAGAATATGTTCGAATTGGCAATGGGAACCAACTTATCAGAGACCCAAAGAAACGAACTAGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGTAAGCAGAAGTACTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGATGGAGGGAAGTGTCCTTACATTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTTCTGAAGGGTTTATGTTCCACTCCAAACTGCAAATTGACTCATAAGGTTATTCCGGAGAGAATGCCTGATTGTTCATACTTTTTGCAAGGCCTATGCTCAAACGAAAATTGTCCATATAGACATGTCAATGTGAACCCTAAGGCACCTATTTGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTACGTCTGTCCAAGTTTTGAAGCAACAGGGACCTGTACTCAAGGAACCAAATGCAAGCTTCACCACCCGAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCCGGTGATCAGAACAACGGCAGAGGACGCTACTTTGGTTCTATCTCTGCTGATGTTTCTGAACCTTGGATTATGGTGGCTCCCAAATTTCCTCAACAGCATGAGGAACCTGAAAGTGAACTAACCGAATACATCAGTCTTGATGCGTATGAAGAAGAGGAAGATGCAGTTGACGAATCATTTGAGCTATCAACATTTTGTGACAATGATACCACGGATCTTCAGTTGGATACTTCTGATGAACTCATCAAACCTGTCTCTATAATAATGAAGTTTGGTTTGCAATCTCAGTCTAGAAGCCTTCAAGCTTAG 5853 0.4042 MDHHQHFLHHNHHQDHRTRFAPPIPQSHHLLLQPPSLPHPPPLSHRPPPPPQQPSYNPPLPHQSPQFPLYHSDHHPRLILEPTWNPNPEDRSSRNYPPIDYHRESHHHHTQNHRTPPSYPPPIRYEHDTSYGRLNTEVNPRETFVYRHHVTTASPSASNLAYQERDDDRIDNRRWLNDRKLHNSSPPHSPSFQLVNDEIKRDYHSSETVRYSGGSNSSRSNSRDCNHNHNHNHGREFSRTPPKKQIQKKSALLRIQTVKPNHRNRDYVPDSNVNFFRGNNSKDQRGGYTKGGGEDRKKENPVEEFDISLESNVLVAKPIVTSGAVSAKLSSVVRIANEGDASEKNEGDSREKNEGEVSVEASGTGTRKLASKIVKKKKTVKRVVKKGSVKSTNSNVSASPSLANEVGGTVEGDSVTRSSSNAASGTVETETCLEEKINAVDKVAAPEDEGDVLDEDINVGLSLLSSKPESSSQEGKNDEDSDIGKESRFEKGGSIPDTPSCVSSSLGKSSCSDCLDVCNSVHDLLSMTTIDKATKSLNGSTTEINHLDCGNKPLCQSEVSLSPGNNIDVGCSGNRNLVDVGNEMNYNVISADIISTQDSADDSGFNSNDATSSEEKITVNDSGNNDIDGEAYCEKMAPVINQNSTSEENTDTAIPLPSSGMVAFSSLGDTRIQDGHDCLQPTSVLKQGSDDRSSSLEEGIIVHQFDIIKDAEKQVSPGEVPLSAEDCDIDKTFPNSNISLGFDIRDTSKIEKRDVKTRLNFLSLDLDDISLTPVNHSNDTDRGSPILLKDPCASEVLDDSIQSLDFYSLSNQVGDTALYGKRAFSEAEFCVANNDSDDENKVSPVSKRKKVTSSDPNLTQFQMEFSDSIVATTSSAEVPIISSDSQEHMKDDVALSSMGMDIQSMPYSDGIAKSSDCIFTGGSFESTDVNRETKSSEHLELQVSTQCEDLAIPNVPFSEQKDNVTPIVPISNTQTDILVIGNIMGEKTDSHASENNYHYGDVVSPTADMLSNDLDMKGDLLAQESLMPCPADGDGATISNSNNELPEDLPDPLSDMYSHGMTSELPDRMITESTAMDIDENICGNEENPDCVSMVKHGSDLDTSSIQHTEKTPKSDHAIECSDQISRNIMPKPTQVYSKVTPLGLNSSCSGLNGSKNQPGGVILKASKGNSFALPKSKSKTPASSINASKSRTWHRTDNNPPASLPRVNISAGIDASKRPILQRKNNFQNTSYIRKGNSLVRNPSPVSAIPQMFSTSLVRRPTPVSSIPQISSINPLPLGLGEIHKGTKPESRADLTDQPIYSNQGKNISSPLLEPPSSGFCENASDPRKFIETNDAPASSEDVLKQYETPENQTGPSGNVNFNAEANDGNISSLNSKRIVYVKPKTNQLVATSSSCDIIVSTDDKGQTAISDSYYKRKKNQLVRTTFENHVNQTVAMPNNIVNSDGQGDSKVICKRRSTKRRSHKVAGISRKSSRASLVWTLGSKNSSGNDRNSRNYQKVLPHLFPWKRTTYLRSFINNSASSFNSGSLSAVGKKLLQLRKRDTVYTRSNRGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREKKDPARIGPQTKRERIFRVGSVRYRMDPSRRTLQRIADDESPSSASTNLGLASKKGYIPRRLVIGNEEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDDGGKCPYIHDPSKIAVCTKFLKGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNENCPYRHVNVNPKAPICEGFLKGYCADGNECRKKHSYVCPSFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDQNNGRGRYFGSISADVSEPWIMVAPKFPQQHEEPESELTEYISLDAYEEEEDAVDESFELSTFCDNDTTDLQLDTSDELIKPVSIIMKFGLQSQSRSLQA 1950
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01093 1950 MobiDBLite consensus disorder prediction 208 223 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 1172 1206 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 1287 1310 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 34 65 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 339 357 - -
Trre1g01093 1950 ProSiteProfiles Zinc finger C3H1-type profile. 1761 1787 IPR000571 GO:0046872
Trre1g01093 1950 MobiDBLite consensus disorder prediction 1828 1859 - -
Trre1g01093 1950 FunFam Zinc finger CCCH domain-containing protein 7 1789 1850 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 339 364 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 224 243 - -
Trre1g01093 1950 ProSiteProfiles Zinc finger C3H1-type profile. 1788 1815 IPR000571 GO:0046872
Trre1g01093 1950 MobiDBLite consensus disorder prediction 472 492 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 1 121 - -
Trre1g01093 1950 ProSiteProfiles Zinc finger C3H1-type profile. 1705 1735 IPR000571 GO:0046872
Trre1g01093 1950 Gene3D - 1733 1788 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 1831 1845 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 386 404 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 384 430 - -
Trre1g01093 1950 ProSiteProfiles Zinc finger C3H1-type profile. 1816 1838 IPR000571 GO:0046872
Trre1g01093 1950 MobiDBLite consensus disorder prediction 1172 1208 - -
Trre1g01093 1950 SMART c3hfinal6 1761 1786 IPR000571 GO:0046872
Trre1g01093 1950 SMART c3hfinal6 1705 1734 IPR000571 GO:0046872
Trre1g01093 1950 SMART c3hfinal6 1735 1759 IPR000571 GO:0046872
Trre1g01093 1950 SMART c3hfinal6 1815 1837 IPR000571 GO:0046872
Trre1g01093 1950 SMART c3hfinal6 1788 1814 IPR000571 GO:0046872
Trre1g01093 1950 PANTHER CCCH ZINGC FINGER 232 1936 - -
Trre1g01093 1950 Gene3D - 1789 1851 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 464 501 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 206 246 - -
Trre1g01093 1950 FunFam zinc finger CCCH domain-containing protein 3 1736 1787 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 259 300 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 598 625 - -
Trre1g01093 1950 MobiDBLite consensus disorder prediction 411 428 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g01093 Trre-Chr1 8243316 8251920 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01093 1711 1870 C2H2 Transcription Factor Family AT2G32930 30.120 6.64e-07 52.0
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g01093 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01093 - - mtr:25482449 2572.73