Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01092 ATGATCTCCGCCTATAATGGAGGCGGAGCCTCCACTACTGGCCGTACTGTGGTGGTTGGTGTTAAGATGGAATCTAACAGTCATCATAGTACAGAGTTGCTTACTTGGTCTTTGGTTAATGTTGCTCAACCTGGTGATCTTATTCTTGCTCTTCATGTTCTTAGAAATGATGAAATTGTGAATCAAGATGGGAAATCTTCTTTGTTCTCTCTTGTCAAAGCATTTGATACTGTTCTTTCTGGTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTGAAGCTTAAAATTTGCCGGGGTTCATCGGTGAGAAAAATTTTGGTTAGAGAAGCAAATGAATATTGTGCAAGTCATGTTATAGTTGGAAAACCTCAAGGTCTTGGTAAAATTAGGCCATCTATTTCTATACATAAGTATTGTGCTAAGAAGCTATCCAAGGATTGTTGGGTTTTTGCGGTTGATAATGGGAAAGTTGTGTTCAAGAGAGATGGATCGCCGGAAAATCACACCGACTTAAAAGGTCGCCAAATTGGATTTCTCGGTTCTCTTCAGTGGAAATTCAGTAAGAGTTTAAAAGTACTAAATGACGATATGCACAGATCGATGTTACTGCCTTCATCTTACGGTGATAGTGACAAGAACTCATTGGCTATGGTGCCTGTAAAGGTAACTGATGCCGGTTCTAGCGTGAAAACTTTCCATGACAGAGAATCAAATAATTTGAAACCTGGTTGGCCACTACTTGGCAGAATTTCATCATCGGATAGGAAAAATTCTGAAAGATCGTTGCCTCGTCGGGTTTCTGTGGTCCAATGGGCAATGCAGTTGCCCTCTAGAAACCTTTCCTTTAATAAAGATAAATTTTTGGGTCTAGATAGCAAATGTGGTGCTCTTGTTCCAGTGGATGCCGAAATAGGGACGATTGCTTCACCTGATTGGAAATCGATAACCCTTCCTAAAGAATTGGAAGGCCTTCATGAGAAATACTCATCTACTTGCAGATTGTTTAACTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATCGGTAAAGGAGGAAGTAGCGAGGTTTATAGAGGCTGCCTTCCTGATGGAAAGGAACTTGCTGTTAAGATCTTGAAGCCTTCTGATGATGTTTTGAAGGAGTATGTTTTAGAGATAGAAATTATCACTGCTTTGAATCACAAAAATATCATTTCCCTTATTGGATTCTGCTTTGAGGATGATAACCTTCTTTTAGTCTACGATTTCTTATCAAGAGGGAGTCTTGAACAAAACCTTCACGGTAATAAGAAAAATCCAATTGAGTTTGGTTGGACCGAAAGATATAAGGTGGCGATGGGTGTTGCCGAGGCTTTGGAATATCTGCATAATAATGGCAACCAACCGGTGATCCATCGTGATGTAAAATCATCAAATGTGTTATTATCTGAGGATTTTGAACCACAGCTCTCTGACTTTGGACTCGCTAAATGGGCATCGACCTCATCATCATATATAACCTGCACCGATGTTTCCGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGCGTGGTGCTTCTTGAGCTTCTTTCCGGGAGAAAGCCTATAAGTGGCGATTATCCTAAGGGTCAAGAGAGCCTTGTAATGTGGGCTAGTCCAATTCTAAATAATGGGAAGCTCTCACAATTGTTGGATCCTAGTTTGGGCGATAACTACGATCATGAAGAGATGGAAAGGATGGTTTTAGCAGCCACCCTTTGTATCAGACGCACACCAGGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGGTCCTTAAAGGCGATGCTGATGTAATAAAGCGCGCAAGGGTAGAAATTAATGCTTTGAAAGCATCAGAGTTGCTTGACGAAGACGCTTGTCCACCTTCTAACTTACAGTCGCACCTTAATCTTGCATTGCTTGATGTGGACGATGACACACTCTCGTTGTACAGTGTTGACCAAAATGTCTCTTTGGAAGACTACTTGAGAGGCAGGTGGAGCCGTTCATCGAGTTTTGATTGA 2085 0.4086 MISAYNGGGASTTGRTVVVGVKMESNSHHSTELLTWSLVNVAQPGDLILALHVLRNDEIVNQDGKSSLFSLVKAFDTVLSGYEGFCNLKQVDLKLKICRGSSVRKILVREANEYCASHVIVGKPQGLGKIRPSISIHKYCAKKLSKDCWVFAVDNGKVVFKRDGSPENHTDLKGRQIGFLGSLQWKFSKSLKVLNDDMHRSMLLPSSYGDSDKNSLAMVPVKVTDAGSSVKTFHDRESNNLKPGWPLLGRISSSDRKNSERSLPRRVSVVQWAMQLPSRNLSFNKDKFLGLDSKCGALVPVDAEIGTIASPDWKSITLPKELEGLHEKYSSTCRLFNYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGKELAVKILKPSDDVLKEYVLEIEIITALNHKNIISLIGFCFEDDNLLLVYDFLSRGSLEQNLHGNKKNPIEFGWTERYKVAMGVAEALEYLHNNGNQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSYITCTDVSGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNNGKLSQLLDPSLGDNYDHEEMERMVLAATLCIRRTPGARPQMSLISKVLKGDADVIKRARVEINALKASELLDEDACPPSNLQSHLNLALLDVDDDTLSLYSVDQNVSLEDYLRGRWSRSSSFD 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01092 694 SMART serkin_6 348 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01092 694 PANTHER OS08G0249100 PROTEIN 227 630 IPR046958 -
Trre1g01092 694 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 14 154 - -
Trre1g01092 694 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Trre1g01092 694 ProSiteProfiles Protein kinase domain profile. 348 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01092 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Trre1g01092 694 FunFam Putative receptor-like serine/threonine-protein kinase 423 635 - -
Trre1g01092 694 Gene3D Transferase(Phosphotransferase) domain 1 423 635 - -
Trre1g01092 694 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 317 422 - -
Trre1g01092 694 SUPERFAMILY Protein kinase-like (PK-like) 329 618 IPR011009 -
Trre1g01092 694 Gene3D Phosphorylase Kinase; domain 1 317 422 - -
Trre1g01092 694 Pfam Protein kinase domain 352 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01092 Trre-Chr1 8238276 8241850 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01092 335 615 Trihelix Transcription Factor Family AT1G68690 45.455 8.00e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre1g01092 Pkinase 4.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01092 - - gmx:100305405 963.755