Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01090 ATGATCTCCGCCTATAATGGAGGCGGAGCCGCCTCCAGTACTGGCCGTACTGTGGTGGTTGGTGTCAAGATGGAATCTAACAGTCATCATAGTACAGAGTTGCTTACTTGGTCTTTGGTTAATGTTGCTCAACCTGGTGATCTTATTCTTGCTCTTCATGTTCTTAGAAATGATGAAATTGTGAATCAAGATGGGAAATCTTCTTTGTTCTCTCTTGTCAAAGCATTTGATACTGTTCTTTCTGGTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTGAAGCTAAAAATTTGCCGGGGTTCATCGGTGAGAAAAATTTTGGTTAGAGAAGCAAATGAATATTGTGCAAGTCATGTTATAGTTGGAAAACCTCAAGGTCTTGGTAAAATTAGGCCATCTATTTCTATACATAAGTATTGTGCTAAGAAGCTATCTAAGGATTGTTGGGTTTTCGCTGTTGATAATGGGAAAGTTGTGTTCAAGAGAGATGGATCGCCGGAAAATCACACCGACTTAAAAGGTCGCCAAATTGGGTTTCTCGGTTCTTTTCAGTGGAAATTCAGTAAGAGTTTAAAAGTACTAAATGACGATATGCACAGATCGATGTTACTGGCTTCATCTTACGGTGATAGTGACAAGAACTCATTGGCTATGGTGCCTGTAAAGGTAACTGATGCCGGTTCTAGCGTGAAAACTTTCCATGACAAAGAATCAAATAATTTGAAACCTGGTTGGCCACTACTTGGCAGAATTTCAACATCAGATAGGAAAAATTCTGAAAGATCGTTGCCTCGTCGGGTTTCTGTGGTCCAATGGGCAATGCAGTTGCCCTCTAGAAACCTTTCCTTTAATAAAGATAAATTTTTGGGTCTAGATAGCAAAAGTGGTGCTCTTGTTCCAGTGGATGCCGAAATAGGGACGATTGCTTCACCTGATCGGAAATCGATAACCGTTCCTAAAGAATTGGAAGGCTTTCATGAGAAATACTCATCCACTTGCCGATTGTTTAACTACCAAGAACTTGTATCATCAACATCAAATTTCTTGCCTGAAAATTTGATCGGTAAAGGAGGAAGTAGCGAGGTTTATAGAGGCTGCCTTCCTGATGGAAAGGAACTTGCTGTTAAGATCTTGAAGCCTTCTGATGATGTTTTGAAGGAGTATGTTTTAGAGATAGAAATTATCACTGCTTTGAATCACAAAAATATCATTTCCCTTATTGGATTCTGCTTTGAGGATGATAACCTTCTTTTAGTCTACGATTTCTTATCAAGAGGGAGTCTTGAACAAAACCTTCACGGTAATAAGAAAAATCCAATTGAGTTTGGTTGGACCGAAAGATATAAGGTGGCGATGGGTGTTGCCGAGGCTTTGGAATATCTGCATAATAATGGCAACCAACCGGTGATCCATCGTGATGTAAAATCATCAAATGTGTTATTATCTGAGGATTTTGAACCACAGCTTTCTGACTTTGGACTCGCTAAATGGGCATCGACCTCATCATCATATATAACCTGCACCGATGTTTCCGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGCGTGGTGCTTCTTGAGCTTCTTTCCGGGAGAAAGCCTATAAGTGGCGATTATCCTAAGGGTCAAGAGAGCCTTGTAATGTGGGCTAGTCCAATTCTAAATAATGGGAAGCTCTCACAATTGTTGGATCCTAGTTTGGGCGATAACTACGATCATGAAGAGATGGAAAGGATGGTTTTAGCAGCCACCCTTTGTATCAGACGCACACCAGGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGGTCCTTAAAGGCGATGCTGATGTAATAAAGCGCGCAAGGGTAGAAATTAATGCTTTGAAAGCATCAGAGTTGCTTGACGAAGACGCTTGTCCACCTTCTAACTTACAGTCGCACCTTAATCTTGCATTGCTTGATGTGGACGATGACACACTCTCGTTGTACAGTGTTGACCAAAATGTCTCTTTGGAAGACTACTTGAGAGGCAGGTGGAGCCGTTCATCGAGCTTTGATTGA 2088 0.409 MISAYNGGGAASSTGRTVVVGVKMESNSHHSTELLTWSLVNVAQPGDLILALHVLRNDEIVNQDGKSSLFSLVKAFDTVLSGYEGFCNLKQVDLKLKICRGSSVRKILVREANEYCASHVIVGKPQGLGKIRPSISIHKYCAKKLSKDCWVFAVDNGKVVFKRDGSPENHTDLKGRQIGFLGSFQWKFSKSLKVLNDDMHRSMLLASSYGDSDKNSLAMVPVKVTDAGSSVKTFHDKESNNLKPGWPLLGRISTSDRKNSERSLPRRVSVVQWAMQLPSRNLSFNKDKFLGLDSKSGALVPVDAEIGTIASPDRKSITVPKELEGFHEKYSSTCRLFNYQELVSSTSNFLPENLIGKGGSSEVYRGCLPDGKELAVKILKPSDDVLKEYVLEIEIITALNHKNIISLIGFCFEDDNLLLVYDFLSRGSLEQNLHGNKKNPIEFGWTERYKVAMGVAEALEYLHNNGNQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSYITCTDVSGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNNGKLSQLLDPSLGDNYDHEEMERMVLAATLCIRRTPGARPQMSLISKVLKGDADVIKRARVEINALKASELLDEDACPPSNLQSHLNLALLDVDDDTLSLYSVDQNVSLEDYLRGRWSRSSSFD 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01090 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre1g01090 695 FunFam Putative receptor-like serine/threonine-protein kinase 424 636 - -
Trre1g01090 695 SUPERFAMILY Protein kinase-like (PK-like) 330 619 IPR011009 -
Trre1g01090 695 Gene3D Phosphorylase Kinase; domain 1 315 423 - -
Trre1g01090 695 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 15 155 - -
Trre1g01090 695 Pfam Protein kinase domain 353 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01090 695 SMART serkin_6 349 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01090 695 Gene3D Transferase(Phosphotransferase) domain 1 424 636 - -
Trre1g01090 695 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 318 423 - -
Trre1g01090 695 PANTHER OS08G0249100 PROTEIN 220 631 IPR046958 -
Trre1g01090 695 ProSiteProfiles Protein kinase domain profile. 349 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01090 695 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01090 Trre-Chr1 8223094 8226686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01090 336 616 Trihelix Transcription Factor Family AT1G68690 45.105 2.22e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre1g01090 Pkinase 4.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01090 - - gmx:100305405 964.526