Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01083 ATGATCGATTTGGATAGTATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCTCATCCACATCATCATCATCACACTGAGTTTTCTTCCTTGAAACCTCGTAATGGAAATAATAATCATCATGTTGTTGGTTCTACAGTTATTGCTCCTGCAACTAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGTCACACATTATGTTCGACATGTAAAACAAGGGTGCACAATCGATGCCCGACTTGTAGGCAAGAGCTCGGAGATATTAGGTGTCTGGCAGTAGAGATGGTTGCCGAATCACTTGAGTTACCATGCAAGTACTATTCTCTTGGATGTACAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGATGATATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTCCCTACCTCGTTGCGCATTTGAGGGATGACCATAAGGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCTCGCGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTTTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTGTACATGGCATTCCTTCGCTTCATGGGAGACGAGAACGAAGCTCGGAACTATACTTATAGCCTTGAGGTTGGGGCAAATGGAAGAAAACTCATTTGGGAGGGAACACCACGGAGTATCCGTGATAGCCACCGTAAAGAGTCACGAGATAGCCACAAAGTATACTTATAG 873 0.4284 MIDLDSIECVSSSDGMDEDEIQHRILHPHPHHHHHTEFSSLKPRNGNNNHHVVGSTVIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLAVEMVAESLELPCKYYSLGCTEIFPYYSKLKHEMICNFRPYTCPYAGSECSAVGDIPYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKESRDSHKVYL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01083 290 Pfam Seven in absentia protein family 112 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre1g01083 290 MobiDBLite consensus disorder prediction 30 52 - -
Trre1g01083 290 CDD RING-HC_SIAHs 68 106 - -
Trre1g01083 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 123 IPR013083 -
Trre1g01083 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 177 IPR013083 -
Trre1g01083 290 SUPERFAMILY TRAF domain-like 123 283 - -
Trre1g01083 290 SUPERFAMILY RING/U-box 57 112 - -
Trre1g01083 290 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Trre1g01083 290 FunFam E3 ubiquitin-protein ligase SINAT3 12 121 - -
Trre1g01083 290 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Trre1g01083 290 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 49 282 - -
Trre1g01083 290 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 290 - -
Trre1g01083 290 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Trre1g01083 290 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 290 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01083 Trre-Chr1 8163170 8166393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01083 61 286 C3H Transcription Factor Family AT2G41980 79.204 9.34e-137 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01083 K04506 - jre:109007585 537.339