Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01082 ATGGCCGGAGATGCTGAAGCTAAAGGATTGGCCCCCGCCAATTTTTTTGAAGAGTGTTTGCCAAGGCATGGTGCTGAGTTTACAGCGATGCTTCCTTTTAGTGCTTATACACATCCCAAATCCGGTGTTTTAAACCTTGCCACAAAGCTCCCTGCTGTTTTGAAGCCAGATTTGGGTCGTAAAACATACATTACTTACATTGCTTACGGAGCTTTAGAAGAGTTGAGTAGAGGTGATTCTGTGACAAAACTACATTGCGACATTTCAGATGCAGTCAATATTCTGACACACACAGCTGATGTAAAGACACCAACATGGCAATCCAGAATTATAAAAAAGTTAAAGAAGAAGTACGAAGTTGAAGATATGCGCGAGCTCTATGGTCAAGACATTAAGGCAGCTGGTTCACGTGGAAGAAAACGCAGAAAGTGTCGCATAGGTAATGCCGTGGATTCTAAAATCCCTGAAAAAGAAGAAGACATTAGGGGTAGAGACTCAACCTTACTTGGAAGTCAAGGAAAAGAAGAGAAACTTGATGCAAAAGCTTGTGTTCAAGAATTCTCCGAATCCAACAGGAATTTCTTGGTTCTTGGAAATGATTGTGAGTTGATGCATTATGATAATGCGGAAGAACAACGTTGCTCTCCACCAGGTGATGAATCTTGTAAAGGAATTTCACCAAGTATTGATAATCAACCTTGTAGTGAAACAAAAGAAACAAAATTTGTCAATGGATTAGATTCTTCAGATGAGTCCAGTTCGGATATTGAGACTGACAAAATAGAGTCAGTTGAAAATGACATATCGGGTAATGATGTTCATTTGGAGACTCAATACGGGAGTGCTGTGTGGGACATATTCCGTAGGCAGGACGTACCCAAACTAAGGGAGTACCTAACTAAACACTTTAGAGAGTTTCGTCACATAACTAGTCTTCCAGTGAGTTATGTAATGATTCATCCTATTCATGACCAGCACCTTTATTTAAATGAAAAGCACAAAAAGCAACTCAAGCTAGAATATGGTGTTGAACCGTGGACGTTTGAGCAATATCTTGGCGAAGCTGTTTTCATACCTGCAGGATGTCCACATCAAGTGAGAAATAGAAAGTCTTGCATAAAAGTGGCCATGGACTTCGTTTCTCCTGAGAATGTTCAGGAATGTGTTCGATTGACAGAAGAATTTCGCTTACTTCCAAAAAACCATAGATCTAAGGAAGATAAATTAGAGATAAAGAAGATGGCACTATATGCTGCTGATGTTGCTATTGCTGAAGTCACTGAACCCGTGGGAGCGAAATGA 1302 0.4025 MAGDAEAKGLAPANFFEECLPRHGAEFTAMLPFSAYTHPKSGVLNLATKLPAVLKPDLGRKTYITYIAYGALEELSRGDSVTKLHCDISDAVNILTHTADVKTPTWQSRIIKKLKKKYEVEDMRELYGQDIKAAGSRGRKRRKCRIGNAVDSKIPEKEEDIRGRDSTLLGSQGKEEKLDAKACVQEFSESNRNFLVLGNDCELMHYDNAEEQRCSPPGDESCKGISPSIDNQPCSETKETKFVNGLDSSDESSSDIETDKIESVENDISGNDVHLETQYGSAVWDIFRRQDVPKLREYLTKHFREFRHITSLPVSYVMIHPIHDQHLYLNEKHKKQLKLEYGVEPWTFEQYLGEAVFIPAGCPHQVRNRKSCIKVAMDFVSPENVQECVRLTEEFRLLPKNHRSKEDKLEIKKMALYAADVAIAEVTEPVGAK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01082 433 SUPERFAMILY Clavaminate synthase-like 17 422 - -
Trre1g01082 433 Gene3D Cupin 231 405 - -
Trre1g01082 433 Gene3D Cupin 5 156 - -
Trre1g01082 433 MobiDBLite consensus disorder prediction 216 236 - -
Trre1g01082 433 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 428 IPR045109 GO:0032454|GO:0033169
Trre1g01082 433 SMART cupin_9 20 396 IPR003347 -
Trre1g01082 433 Pfam JmjC domain, hydroxylase 269 379 IPR003347 -
Trre1g01082 433 ProSiteProfiles JmjC domain profile. 27 396 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01082 Trre-Chr1 8158305 8160870 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g01082 JmjC 2.1e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01082 K15601 - lang:109335468 523.087