Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01080 ATGTCGAAGACAAAGTCATTTCACGGCGTAAACGTCTTCATGTCGCGAAACCTAGTTCCGCCGGAAGTCTTCGATACGCTTCACGACGCCGTTAAAGATAACGGCGCTCAAATTCACCTTTGTTGTGATCCTTCCCGTAATGGTCCCAACGATTATCATATTATTTCCTGCAGCAAACACGAGAAATTTCTAGATCTTAAATCAAAGGGATGTAAAATGCTCGGTCCCAGATGCGTTCTTTTATGTGCTAAAGAACGAAGGGCTCTGCCTAAACAAGGCTTCACTTGTTGCTTTGCTATGGATGGTGTCAAAATACTTGCCTCTGGTTTTGATGCGGATGAGAAGATTAAGATAGAAGAATTAGTGACTGAAATGGGGGGAGCTCTACACACTAAACCGTCGTCAGATTTGAACTTTGTCATCGTGAAAAATGTTTTGGCTCTAAAGTACAAGTGGGCTTTGAATGTCCTGAAGAAACCAATAGTTACTTACGAATGGTTAAAGCAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATATAAGGTTCTTCCTTTCTCTGGGTTAAAGATCTGTGTGACTGGAATCTCAGCAGATAAGCGCAAAGAAATGGAAAAAGTTATTTTACAAAATGGTGGAAAATACTCTGCGGAACTGACAAAGAAGTGTGATAAGTATAAGGTGGCGAAACGTTGGGGCCACATTCATATTGTAACAATGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGAGTGGATCTTTATCTTCACGTAAGGTGACCAGGCACTTAACAGTGCAACATAGCCAGGAAAAGGACATTGGGAAAATGCAATCTAGCTCATTCTCAAGAGCCGCGGATTCAAATAAGCTAGTTTCTAATTGCGCCGAGTCTATGTATATAGATTCAGAAGCTACACAGTCACAACATACATCTTCTTTTTCAAATGTGTCATTATTTGTTAAAGAGGCAGATGTTGAAGCACATCCATTACAGACCAGCAATGGATTGAACTTTGATGGTGCTGTTGCCAATGATTCCGAATCTGATGACAATGACCTGTACTTAGCAGAGTGCAGAATATCACTTGTTGGTTTTGAAGCTTCCGAAATGCGGAAGCTAGTTAATTTGGTGCGCAAAGGTGGAGGCTCTCGATACATGTCTTTGAATGATAAGTTGACACATATAGTAATTGGAAATCCTACAGAAATGGAAAAGAAGGATGTAAGGAGTATTGCTGCTCTAGGTGTCATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGCGACCGTGAAAAGAAACAAGTCCCTGTTCTTCGACGACACATTGCATATGATCTTGTTCTTCCAAAAGTAAAAGGAGCAGTTAGTGGCATTGTGCCTATGGATCAAAGTAAAAGCTCAAGCTTTCGCCAAAGCTTCCAGACTGATCAGGTGGTGGATATTAAGGACTTTGGAGTTACAATGCCAGAATCTTTGGAGAAAAACAAACAAGAGAAACACAATATGGGTATGAATGTTGTCACATTTGGTAAAGCATCGGGTAGAACTATGTCTCAAACTCAACTTCCTGATAAAAAGTTGAGGGTCCAAAAGATTTCGCAACATGACTCCAATGTGCATGTGAAGTCAGCAAATGTTTTCAAAGGGAAAACATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAAAGGTGAGATTGTTCAATGGATAAATCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTATCCACTATACTATTGAATGCCATGGTGTAAAACCGTCGATAGGTGATTATGGAAGTACCTATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCATTGCTGGATGTTGACAGTCATATTCTTTATTCTCCACTTCCCTGCTGTGTTCCCTTGCCTGGTTTTGAAAGCCTCTGGTTTTGTGTTTCACAATATGATGAGAAAGACAGAATTCTACTTCGGAACTTGTGTAAAGTTCTAGGAGCTAAAATTGCTGATAAATTGACTAAGAAGGTGACCCATTTATTGTGTAAATTCACCAACGGACCCAAGTACGAGGCTTCTTGTAAGTGGGGGATCCGATCAGTTACATCCGAGTGGATACTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATAGATCAATTTTTGCCCAAAGAAGTCACCACTCAAGACCGGGAGGCAGGAGTTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAATGACATGCCGTCCCAGTTTCCAAGTCAATCACAAAGTTTGAGAAACACGGCAAATCAAAATGTAGATAGTAGAGTTGACAATCATGGGACTCATTCTAAAATATCAAGCAGTAATAGCAAAAAGGCAAGGCTCATGGAAGAACCTGGCCTGTATAATAAGGTGCCTTCTACAGTAAATCCAGGTATTCATGTCTCTGACTTGAATTTGTCTAAAGACAATACACTCAAAGATGCTCGGGAGGCAAGCCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAAAGGTCACCAGGGAATACAGGTTGTGAGAGAAGTATTTACCCATCTGATTGTTCAGTCGTTGGTGAAGACAATCCAAATCCTCATACTGTGTTCGGATTACCGAAGCACTGGCTGAATAGAAATGGAAGAAACGATGATGATAATAGTGAGACTTCTCAAGACCGAAGAGCAAGAATGTATGATGCTTTTAGTGAAACACAAACAGAATCTCAGATTGTTAGTTATGAAGAAGACTTGTCTGGAAGGCAAATGCTAATAGATAGAGTTTTAACTCGAAGTAGCATGCAGTGA 2898 0.4061 MSKTKSFHGVNVFMSRNLVPPEVFDTLHDAVKDNGAQIHLCCDPSRNGPNDYHIISCSKHEKFLDLKSKGCKMLGPRCVLLCAKERRALPKQGFTCCFAMDGVKILASGFDADEKIKIEELVTEMGGALHTKPSSDLNFVIVKNVLALKYKWALNVLKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGISADKRKEMEKVILQNGGKYSAELTKKCDKYKVAKRWGHIHIVTMKWFDQSIARRACLNEESYPVQSGSLSSRKVTRHLTVQHSQEKDIGKMQSSSFSRAADSNKLVSNCAESMYIDSEATQSQHTSSFSNVSLFVKEADVEAHPLQTSNGLNFDGAVANDSESDDNDLYLAECRISLVGFEASEMRKLVNLVRKGGGSRYMSLNDKLTHIVIGNPTEMEKKDVRSIAALGVIYVVKTSWLEDCDREKKQVPVLRRHIAYDLVLPKVKGAVSGIVPMDQSKSSSFRQSFQTDQVVDIKDFGVTMPESLEKNKQEKHNMGMNVVTFGKASGRTMSQTQLPDKKLRVQKISQHDSNVHVKSANVFKGKTFCFSNLFPEERKGEIVQWINQGGGEIISGQTKQSIHYTIECHGVKPSIGDYGSTYISSHWIRSCLEDGSLLDVDSHILYSPLPCCVPLPGFESLWFCVSQYDEKDRILLRNLCKVLGAKIADKLTKKVTHLLCKFTNGPKYEASCKWGIRSVTSEWILECVKQNGVVAIDQFLPKEVTTQDREAGVCTVSQFPTQAVRMINDMPSQFPSQSQSLRNTANQNVDSRVDNHGTHSKISSSNSKKARLMEEPGLYNKVPSTVNPGIHVSDLNLSKDNTLKDAREASHAVPDVAAAIEDLLEQTSKMHDQRSPGNTGCERSIYPSDCSVVGEDNPNPHTVFGLPKHWLNRNGRNDDDNSETSQDRRARMYDAFSETQTESQIVSYEEDLSGRQMLIDRVLTRSSMQ 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01080 965 Gene3D BRCT domain 36 94 IPR036420 -
Trre1g01080 965 Gene3D BRCT domain 99 185 IPR036420 -
Trre1g01080 965 MobiDBLite consensus disorder prediction 768 806 - -
Trre1g01080 965 SUPERFAMILY BRCT domain 362 448 IPR036420 -
Trre1g01080 965 Gene3D BRCT domain 653 736 IPR036420 -
Trre1g01080 965 SUPERFAMILY BRCT domain 186 262 IPR036420 -
Trre1g01080 965 CDD BRCT 103 170 - -
Trre1g01080 965 Gene3D BRCT domain 186 262 IPR036420 -
Trre1g01080 965 SUPERFAMILY BRCT domain 617 738 IPR036420 -
Trre1g01080 965 ProSiteProfiles BRCT domain profile. 362 454 IPR001357 -
Trre1g01080 965 Pfam twin BRCT domain 659 719 IPR001357 -
Trre1g01080 965 Pfam twin BRCT domain 190 243 IPR001357 -
Trre1g01080 965 Gene3D BRCT domain 551 647 IPR036420 -
Trre1g01080 965 CDD BRCT_TopBP1_rpt2_like 186 251 - -
Trre1g01080 965 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Trre1g01080 965 FunFam Transcription coactivator 344 454 - -
Trre1g01080 965 ProSiteProfiles BRCT domain profile. 554 641 IPR001357 -
Trre1g01080 965 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 9 962 - -
Trre1g01080 965 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Trre1g01080 965 ProSiteProfiles BRCT domain profile. 654 737 IPR001357 -
Trre1g01080 965 SMART BRCT_7 97 174 IPR001357 -
Trre1g01080 965 SMART BRCT_7 184 251 IPR001357 -
Trre1g01080 965 SMART BRCT_7 651 727 IPR001357 -
Trre1g01080 965 SMART BRCT_7 364 444 IPR001357 -
Trre1g01080 965 SMART BRCT_7 556 631 IPR001357 -
Trre1g01080 965 FunFam Transcription coactivator 552 647 - -
Trre1g01080 965 ProSiteProfiles BRCT domain profile. 182 261 IPR001357 -
Trre1g01080 965 MobiDBLite consensus disorder prediction 768 807 - -
Trre1g01080 965 Gene3D BRCT domain 353 451 IPR036420 -
Trre1g01080 965 SUPERFAMILY BRCT domain 557 643 IPR036420 -
Trre1g01080 965 CDD BRCT_TopBP1_rpt2_like 652 727 - -
Trre1g01080 965 Pfam BRCT domain, a BRCA1 C-terminus domain 556 638 IPR001357 -
Trre1g01080 965 FunFam Transcription coactivator 97 185 - -
Trre1g01080 965 SUPERFAMILY BRCT domain 59 183 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01080 Trre-Chr1 8134215 8151494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01080 1 964 Core DNA Replication Machinery Family AT1G77320 49.022 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01080 K10728 - gmx:100804966 1417.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01080 1 8134215 8151494 Trre1g01080 1 8134215 8151494 ECH