Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01078 ATGATTCATAATCAATTCATTTTCTTCTTCCTTTTCACCTTTTTCATAGCTTCTCATACTGCTCCTCCTCCTTCTGCAGCATCATGTCCTATGGATCTAAGCTATGTTGAAACCTTTCCATGGGACACATCAACATGCAGAGATCCAGTTGACTATGGACACTGTTGTCAATCTCTTCTTAGTCTCTTTGGTATAGGACTTGCAAAACATCTCAAAGAAACTTCAATCTTTCAACTTCCAAATGAAAACATTTCCACAACATGTTTACAAGATTTCAAACTCAAACTTTCATCCTTAAAACTTCAACCATCATTAGTCCCTAGTTGTTTCCACAACTCAACTCAGTTTGTCACAAACACATCAAGTTGTGCAGGTATAACAAACATCACAGATTGGAAACAAAAAGTTGGTATGTTAAGTCCTTTAGATACTTCTTGTAATGTTGATTTGAGTTCTGAAACTAGTTGCAATATTTGTACTGAAGCTGGTTTTAAAGTCACTGCTCAACTTAGAAGTATTTCTCCAAATAATTCTTCTAAGTGTTTTTACTATTCAGTTTTATATGCTATTGGTATTGTGAATCAACTTGGTCCTACAGATCCTGTCACAGCTGGTTGTATACTTGGTATGGCACTTTCATCTAAAGGGTCATCAAATAATGGAAAAATTTTGAAACTTGTTTTTGGTTTATTAGGTGCTGTTGTTGGTGTTATTCTAGCTTTTGTGTTGATTGTTATGTATAGAAAATGGAATAAGATGAGGAGAGAAAATCTATATCATAGATCAGTTGAAAATAGTGTTAGAGATAGTGTTTTGCCTAATACAGGTGCTAAATGGTTTCATATATCAGAACTTGAAAAAGCTACTAATAAGTTTTCACAGAAGAATATGATTGGTCAAGGTGGTGATGGAGTTGTGTACAAAGGAACACTTTCTGATGGAACTTTAGTTGCAGTGAAAGAAATTTTTGATTTAGATACAAGAGGTGATGAAGAGTTTTGTTATGAAGTTGAGATTATAAGCAAAATTAAGCATAGGAATCTTCTTGCTTTAAGAGGATGTTGTGTTACAAGTCATAGTGTTAAAGGTAAGAGAAGGTTTTTGGTTTATGATTATATGCCTAATGGAAGTTTAAGTTATCAATTATCAATTAATGGTTCTAATAAGTTAACTTGGCCACAAAGAAAGAATATTATTCTTGATGTAGCTAAAGGGTTAGCTTATTTGCATTACGAAATCAAGCCGCCGATTTTTCATCGTGATATTAAGGCGACTAATATACTTTTGGATTCAAAAATGAAAGCAAAAGTTGCTGATTTTGGATTAGCAAAACAAGGTAATGAAGGACAATCACATCTTACAACAAGAGTAGCAGGAACATATGGTTATTTAGCACCCGAGTATGCGTTATACGGACAATTAACCGAGAAAAGTGATGTTTATAGTTTCGGAATTGTGATACTTGAAGTAATGAGTGGTAGAAAAGTTCTTGATACAATGAATTCCCCTGTTGTTTTGATAACTGATTGGGCTTGGACATTAGCAAAAACAGGAAAAGTTGATGAAATATTTGATGAAGCTGTTAAAGATGAAGGACCAGAGAAAATTATGGAAAGATTTGTACTAGTTGGAATTCTTTGTGCTCATGCAATGGTTGCATTAAGGCCTACTATTGCAGAAGCACTTAAGATGTTAGAAGGTGATATTGATATTCCTAATTTACCTGATAGACCTGTTCCACTTGGTCATGAATCATTTCAATCTTCACTTTTGCAAGGAAGTGGAAGAACAACACCTTATACTTCATTTTATTCTACTTCAAATATTAGTACAATTAGTAGAAATTGA 1848 0.3355 MIHNQFIFFFLFTFFIASHTAPPPSAASCPMDLSYVETFPWDTSTCRDPVDYGHCCQSLLSLFGIGLAKHLKETSIFQLPNENISTTCLQDFKLKLSSLKLQPSLVPSCFHNSTQFVTNTSSCAGITNITDWKQKVGMLSPLDTSCNVDLSSETSCNICTEAGFKVTAQLRSISPNNSSKCFYYSVLYAIGIVNQLGPTDPVTAGCILGMALSSKGSSNNGKILKLVFGLLGAVVGVILAFVLIVMYRKWNKMRRENLYHRSVENSVRDSVLPNTGAKWFHISELEKATNKFSQKNMIGQGGDGVVYKGTLSDGTLVAVKEIFDLDTRGDEEFCYEVEIISKIKHRNLLALRGCCVTSHSVKGKRRFLVYDYMPNGSLSYQLSINGSNKLTWPQRKNIILDVAKGLAYLHYEIKPPIFHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEVMSGRKVLDTMNSPVVLITDWAWTLAKTGKVDEIFDEAVKDEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLQGSGRTTPYTSFYSTSNISTISRN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01078 615 Gene3D Phosphorylase Kinase; domain 1 253 372 - -
Trre1g01078 615 SUPERFAMILY Protein kinase-like (PK-like) 277 592 IPR011009 -
Trre1g01078 615 Pfam SPARK 25 182 IPR043891 -
Trre1g01078 615 Pfam Protein kinase domain 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01078 615 CDD STKc_IRAK 298 567 - -
Trre1g01078 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Trre1g01078 615 FunFam Receptor-like serine/threonine-protein kinase At4g25390 257 372 - -
Trre1g01078 615 PANTHER OS01G0750732 PROTEIN 43 575 - -
Trre1g01078 615 ProSiteProfiles Protein kinase domain profile. 292 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01078 615 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 373 573 - -
Trre1g01078 615 Gene3D Transferase(Phosphotransferase) domain 1 373 571 - -
Trre1g01078 615 SMART serkin_6 292 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01078 Trre-Chr1 8122076 8123923 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01078 26 597 Receptor kinase-like Gene Family AT1G11050 51.777 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre1g01078 Pkinase 7.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01078 - - mtr:25482441 1059.28