Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01073 ATGGTGAAGGAAACTGAGTATTACGATATCCTTGGAGTTTCTCCTTCTGCTTCCGACGATCAAATTCGCAAGGCTTATTATCACAAGGCAAAGCAAGTACATCCTGATCGAAATCAAAACGATCCGAATGCTGCACAAAAGTTCCAGATTTTGGGGGAAGCGTATCAGGTTTTGAGTGATCCGGTACAGAGAAATGGCTATGATCAGAATGGGAAGCATTCTGTATCTAGAGAAACTATGCTTGACCCCATGGCTGTCTTTGCCTTGCTCTTTGGAAGTGAATTGTTTGAGGACTATGTTGGACATCTAGCTGTTGCATCGATGGCTGCTACTGAACTAGCTGATGAAAGTGAGGATTTGCAGGAAAAGCTAAAGGCTGTCCAGAAAGAAAGGGAAGAAAAGTTAGCAAGATTTTTGAAAGATTTTCTCGGCCAATATGTCCGTGGTGACCAAAAGGGATTCTTCCAGCGAGCAGAATCTGAAGCAAGACGGCTTTCTCATGCAGCCTTTGGAGTTGACATGTTACATACCATCGGCTATATATACTCAAGACAAGCAGCACAAGAGCTAGGGAAAAAGGCCCTTTACCTTGGAGTGCCATTTCTGGCTGAATGGGTTCGCAACAAAGGACATTTTTGGAAATCACAGTTAACAGCTGCTAAAGGTGCTTTTCAGTTGCTCCAACTTCAAGATGAACTCAGCAAGCAATTTAAAACCAGTAGTAGTTGCCCTGAAAATGTTGACTCCCATATCCGTCTTAATAAGGATACTCTGTTGAATTCCTTGTGGAAGTTAAATGTAGTGGACATAGAAGTAACCCTTGCACATGTGTGTCAAATGGTGCTAAAGGAAAATAATGTTCGGAGAGAAGAACTTAAAGTTCGAGCTACCGCTCTTAAAATTCTTGGGAAGATATTTCAGGAAAAGAATGCAAAAGGAGAAACACTGAAGAAAAAACTCGCTGTTGATTCTGATGACGAAGGTAGCAGCTCTGATTCATCAGACGATGAATCACATAGAGCACTTACCTATCGAACTCCTTTTTTCAATCAGGGTATTGGTAGGCTCTTCAAATGCCTTTGTAATCCAGCATTTGATGTGGATGATGATGAAGAGATAGTTTACAAAGGAAAATGA 1137 0.4142 MVKETEYYDILGVSPSASDDQIRKAYYHKAKQVHPDRNQNDPNAAQKFQILGEAYQVLSDPVQRNGYDQNGKHSVSRETMLDPMAVFALLFGSELFEDYVGHLAVASMAATELADESEDLQEKLKAVQKEREEKLARFLKDFLGQYVRGDQKGFFQRAESEARRLSHAAFGVDMLHTIGYIYSRQAAQELGKKALYLGVPFLAEWVRNKGHFWKSQLTAAKGAFQLLQLQDELSKQFKTSSSCPENVDSHIRLNKDTLLNSLWKLNVVDIEVTLAHVCQMVLKENNVRREELKVRATALKILGKIFQEKNAKGETLKKKLAVDSDDEGSSSDSSDDESHRALTYRTPFFNQGIGRLFKCLCNPAFDVDDDEEIVYKGK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01073 378 Pfam X-domain of DnaJ-containing 128 312 IPR026894 -
Trre1g01073 378 CDD DnaJ 6 60 IPR001623 -
Trre1g01073 378 Coils Coil 110 137 - -
Trre1g01073 378 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 330 - -
Trre1g01073 378 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Trre1g01073 378 PRINTS DnaJ domain signature 8 26 IPR001623 -
Trre1g01073 378 PRINTS DnaJ domain signature 43 63 IPR001623 -
Trre1g01073 378 PRINTS DnaJ domain signature 63 82 IPR001623 -
Trre1g01073 378 PRINTS DnaJ domain signature 26 41 IPR001623 -
Trre1g01073 378 SMART dnaj_3 5 63 IPR001623 -
Trre1g01073 378 Pfam DnaJ domain 6 68 IPR001623 -
Trre1g01073 378 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Trre1g01073 378 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Trre1g01073 378 Gene3D DnaJ domain 1 85 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01073 Trre-Chr1 8087162 8090808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01073 7 68 C2H2 Transcription Factor Family AT1G74250 41.791 2.65e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01073 - - gmx:100793811 636.721