Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01068 ATGGAATCCTCTCAGAATAAATACCAAACCCTAACTTGCGTCGAAGAAGATGATGATTCCAACAAATGCAATAATTTCTACGATATCTATGGTCCCCAAGCCAAAGCAGATGTTGTTTTCAAGGAAAACGATAATTCAAATCTGAATCTTGCTGACATTCAAGGACTTGTAACTTGGGTGCTTGGCGAAGGATTTATGCCATCATGGGTTTTTATCAAGAATAAGCCTCTTATTCTCAAAGTAGTTATGCTCTATATGCCAGGCCTGGATGCAGCTTTGTACATGTCACTGTCCAAAGCGCTTCCCAATTTAAAAAAATCATGTGGCAAACCAAGACCAGTCCTTGCTCTCAGTTGTGTATCAGATAGTATGCAAACAATAGACGCACTCCTAACATGCAAGCAGAAAAGAAAAAGGGATCAAGATGGTTCAATGACGACAAAATCTACTCTGACATCTCAACAAGAAGAAGTCTGCGGTGGTACTGCCGGTCTATCATTTGAGGAGATTACAAAAGATATCCCTTTCCCTGTTGCATACTATACACTAACAGAAAAAGATTTGGAAGAGAATGAATATCCTGTTAATAAGCCAGAATTTCTATCTACTCTTCCTGCTCCTCCGGGATCTCCTTTTTATGAGATGGTAGCACTTGACTGTGAGATGTGCATAACAGGTGAGGGGTTTGAGCTGACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTTAAACCTTCAAATCATATCACTGATTACAATACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGACGACAAATCTGACAGACATTCAGGAAAAGTTCCGAAAACTGGTTTATAAAGAAACTATTCTTGTCGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTAGTCATTGACACAGCAGTATTATATAAACACCCCCGAGGGTCTTCCCATAAATCCGCTCTACGGTTTCTTACTAAAAGATTTCTTTCAAGGGAGATACAACAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTAGCACTATTGAAGATCAGAAATGGGCCTGGCTTTGGTGCTCCTCCATCCTTTATGCGGAAAAAGCTTCTTTCAATTTTGAGCGAGTCTGGCAAAACTTCTTCAATGGTTGATGATATATCGATTGTAAAACGATTTGCCTCCGAGTCCTCTAATGCAATTCCAGTGACGTCTGATGAAGACGCCCTTGCAAAAACCATCAAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAATTTTCAGAGTTACACACACACTTGAAGAAACAAGCTGAGGATTCAGATAGCTTGAACAAAAAACTAGCAGAGATGATTGCATTACATACATGTGAGAAGAGTTCTTCAAAAGGGAAAGGCCTCAAGTCGAATGTATCTGCTGAACTGAAGGAAATTCTTACACGCATGGATAATAGAATTCATAAACTGTATAAGTCATTACCAACAAATGCTATGTTGATAGTTTGCACTGGTCATGGTGACACGGCAGTTGTCCGCAGGTTGAGGAAAATACTTACGGAGGAGGATGAACCTAATTTTGGCCGTGAGAAGATTGTGGAAAGCTTGGAAGAGTTTCAGGCTAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACACTGA 1713 0.3987 MESSQNKYQTLTCVEEDDDSNKCNNFYDIYGPQAKADVVFKENDNSNLNLADIQGLVTWVLGEGFMPSWVFIKNKPLILKVVMLYMPGLDAALYMSLSKALPNLKKSCGKPRPVLALSCVSDSMQTIDALLTCKQKRKRDQDGSMTTKSTLTSQQEEVCGGTAGLSFEEITKDIPFPVAYYTLTEKDLEENEYPVNKPEFLSTLPAPPGSPFYEMVALDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNHITDYNTRFSGITAEMLDGVTTNLTDIQEKFRKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATMELALLKIRNGPGFGAPPSFMRKKLLSILSESGKTSSMVDDISIVKRFASESSNAIPVTSDEDALAKTIKELKNEKVHFIWTQFSELHTHLKKQAEDSDSLNKKLAEMIALHTCEKSSSKGKGLKSNVSAELKEILTRMDNRIHKLYKSLPTNAMLIVCTGHGDTAVVRRLRKILTEEDEPNFGREKIVESLEEFQARAEVALCFVGVKH 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01068 570 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 26 385 IPR047021 GO:0004527
Trre1g01068 570 FunFam RNA exonuclease NEF-sp 212 375 - -
Trre1g01068 570 Gene3D Alkaline Phosphatase, subunit A 369 562 IPR017850 -
Trre1g01068 570 SMART exoiiiendus 214 373 IPR013520 -
Trre1g01068 570 SUPERFAMILY Ribonuclease H-like 215 368 IPR012337 -
Trre1g01068 570 SUPERFAMILY Alkaline phosphatase-like 381 525 IPR017850 -
Trre1g01068 570 Gene3D - 213 368 IPR036397 GO:0003676
Trre1g01068 570 CDD REX1_like 216 365 IPR034922 -
Trre1g01068 570 Pfam Exonuclease 216 363 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01068 Trre-Chr1 8048823 8056247 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01068 216 363 C2H2 Transcription Factor Family AT2G48100 32.515 3.68e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01068 K14570 - gmx:100802793 891.338