Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01067 ATGGGTTTGTATCAAGGCCTGGATGCAGCTTTGTACCTGTCACTGTCCAAAGCGCTTCCTAATTTTAAAAAATCATGTGGCAAACCAAGACCAGTCCTTGCTCTCAGCGTGTCAGATAGTATGCAGACATTAGACGCACTCCTAACATGCAAGCCGAAAAGAAAAATGGATCAAAACATTTCAATTATGACAAAATTGTCTCCGACATCTCAACAAGTCTGCGGTGGTACTGCCGGTCTATCATTTGAGGAGATTACGAAAGACATACCTTTCCCTGTTGCATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGAATATCCTGTTAATAAGCCAGGTTTTCTTTCTACTCTTCCTGCTCCTTTGGGATCTCCTTTTTATGAGATGGTAGCACTTGACTGTGAGATGTGCATAACAGGTGAGGGGTTTGAGCTTACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTAAAACCTTCAAATCATATCATTGATTACAATACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGGCGACAAGTTTGGCAGACATTCAGGAAGAGTTCCGAAAACTGGTTTACAAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTGGTGATTGACACAGCAGTATTATACAAACACCCCCGAGGGTCTCCCTATAAATCCGCTCTACGGTTTCTTACTAAAAGATTTCTTTCAAGGGAGATACAGCAATCATGGAATGGACACGATAGTATTGAAGATGCTAGAGCTACCATGGAATTAGCACTATTGAAGATCAGAAATGGCAAGTAA 864 0.4016 MGLYQGLDAALYLSLSKALPNFKKSCGKPRPVLALSVSDSMQTLDALLTCKPKRKMDQNISIMTKLSPTSQQVCGGTAGLSFEEITKDIPFPVAYYTLTEKDLEENEYPVNKPGFLSTLPAPLGSPFYEMVALDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNHIIDYNTRFSGITAEMLDGVATSLADIQEEFRKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSPYKSALRFLTKRFLSREIQQSWNGHDSIEDARATMELALLKIRNGK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01067 287 SMART exoiiiendus 129 287 IPR013520 -
Trre1g01067 287 FunFam RNA exonuclease NEF-sp 127 287 - -
Trre1g01067 287 Pfam Exonuclease 131 278 IPR013520 -
Trre1g01067 287 SUPERFAMILY Ribonuclease H-like 130 282 IPR012337 -
Trre1g01067 287 Gene3D - 128 287 IPR036397 GO:0003676
Trre1g01067 287 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 5 286 IPR047021 GO:0004527
Trre1g01067 287 CDD REX1_like 131 280 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01067 Trre-Chr1 8043168 8046541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01067 129 278 C2H2 Transcription Factor Family AT5G40310 29.762 1.84e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01067 K14570 - tpra:123920717 514.998