Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01066 ATGGGTTTGTATCAAGGCCTGGATGCAGCTTTGTACCTGTCACTGTCCAAAGCGCTTCCTAATTTTAAAAAATCATGTGGCAAACCAAGACCAGTCCTTGCTCTCAGCGTGTCAGATAGTATGCAGACATTAGACGCACTCCTAACATGCAAGCCGAAAAGAAAAATGGATCAAAACATTTCAATTATGACAAAATTGTCTCCGACATCTCAACAAGAAGTCTGCGGTGGTACTGCCGGTCTATCATTTGAGGAGATTACGAAAGACATACCTTTCCCTGTTGCATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGAATATCCTGTTAATAAGCCAGGTTTTCTTTCTACTCTTCCTGCTCCTTTGGGATCTCCTTTTTATGAGATGGTAGCACTTGACTGTGAGATGTGCATAACAGGTGAGGGGTTTGAGCTTACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTAAAACCTTCAAATCATATCATTGATTACAATACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGGCGACAAGTTTGGCAGACATTCAGGAAGAGTTCCGAAAACTGGTTTACAAAGAAACTATTCTTGTTGGGCATTCTTTGGAAAATGATTTATTAGCATTGAAGATATCACATGACTTGGTGATTGACACAGCAGTATTATACAAACACCCCCGAGGGTCTCCCTATAAATCCGCTCTACGGTTTCTTACTAAAAGATTTCTTTCAAGGGAGATACAGCAATCATGGAATGGACACGATAGTATTGAAGATGCTAGAGCTACCATGGAATTAGCACTATTGAAGATCAGAAATGGCAAGTAA 867 0.4014 MGLYQGLDAALYLSLSKALPNFKKSCGKPRPVLALSVSDSMQTLDALLTCKPKRKMDQNISIMTKLSPTSQQEVCGGTAGLSFEEITKDIPFPVAYYTLTEKDLEENEYPVNKPGFLSTLPAPLGSPFYEMVALDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNHIIDYNTRFSGITAEMLDGVATSLADIQEEFRKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSPYKSALRFLTKRFLSREIQQSWNGHDSIEDARATMELALLKIRNGK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01066 288 FunFam RNA exonuclease NEF-sp 128 288 - -
Trre1g01066 288 SMART exoiiiendus 130 288 IPR013520 -
Trre1g01066 288 CDD REX1_like 132 281 IPR034922 -
Trre1g01066 288 Pfam Exonuclease 132 279 IPR013520 -
Trre1g01066 288 Gene3D - 129 288 IPR036397 GO:0003676
Trre1g01066 288 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 5 287 IPR047021 GO:0004527
Trre1g01066 288 SUPERFAMILY Ribonuclease H-like 131 283 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01066 Trre-Chr1 8043168 8046541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01066 130 279 C2H2 Transcription Factor Family AT5G40310 29.762 1.74e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01066 K14570 - tpra:123920717 517.309