Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01062 ATGGTGCCTCCGGGGCCGCCGAATCCGATTGGTGGTGCCCCATCTTTGTCGCCTTCGCTTATGAGAACGAATTCCGGGATGATGGGTGGTCAAGGAGGACAAGCTTCTTTTCCTTCGTTGGTTTCGCAGCGAAATCAGTTTAATAACATGAATATGTTGGGCAATATGTCTAATGTTGCTTCCATGATGAATCAGTCTTTTTCCAATGGGATTCCGAACTCGGGGCTCGGTGGATTGGGAAGTGGTCAGAGGGGTGGTATGGATGCTGGGGCTGAACAGGACCCTTTGTCTGGTGTTGGTAATGGAATGGGATTTGGTAATCCTTCGTCGTCGTTTGGGCAAGCTAATGTTGCTAACCCTGGTTCATCTGGTCAAGGCCAAGGTCAGGGTCAGCAATTTTCAAACCCTTCTGGTAACCAGTTGTTGTCGGATCAACAACATTCACAACAACTTGATGTTCAAAATTTCCAACATAATCAGCAGCAGTCAGCGCAGCAGTTTTCGGCTCCAATGAACACTCAACAACAACAACAACAGCAGCAACATCATCAGCAGCAGCAACAGCATTTTCAATCAATGCGAGGAGGGATAGGTGGTATTGGACCGGTGAAGATGGAGCCACAGGTAAACAGCGATCAGTTTGGGCAGCAGCAGCAATTGTCATCGCTGAGGAGTCTTGCTCAGGTAAAATTAGAACCGCAACAACTTCAATCAATGAGAGGTATGGCTACTGTAAAAATGGAGCCTCAGCATAGCGATCAGCCGTTTTTGCATCAACAGCAGCAACAACAGCAGCAGCAACAGCAACAACAACTCCTCCATATGTCAAGGCAAACCTCCCAGGCTACTGCTGCACAGATGAACCTTTTGCAACAACAGAGACTTTTGCAATTTCAACAGCAGCAACATCAGCAACAACTCTTAAAGGCTATGCCTCAGCAGCAACGGTCCCAGATACCACAGCAGTTTCAACAGCAGAATATGCCTGTAAGGTCTCCTGTGAAACCAGCATATGAACCTGGGATGTGCGCTAGGCGCCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGATAACAACATCGATTTCTGGAGGAAATTTGTTGCCGAGTATTTTGCTCCTAATGCCAAAAAGAAGTGGTGTGTTTCCATGTATGGAAGTGGCAGACAAACAACTGGAGTTTTCCCTCAGGATATATGGCACTGTGAAATATGTAATCGCAAACCGGGCCGTGGGTTTGAGGCAACTGCTGAGGTTCTTCCCAGGCTATTCAAAATAAAGTATGAAAGTGGTACTTTAGAAGAGCTACTGTATGTTGACATGCCTCGTGAATATCATAATTCCTCTGGCCAAATTGTTCTAGATTATGCAAAAGCAATTCAAGAAAGTGTTTTTGAGCAACTTCGCGTTGTTCGTGATGGTCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGCTCTTGGGAGTTTTGCGCCCGGCGCCATGAAGAGCTCATCCCCAGAAGATTGTTAATACCTCAGGTTAGTCAGCTTGGACAAGTTGCTCAAAAATATCAGTCATGTACTCAAAATGCAGCACCCAATCTATCCGTTCCAGAGTTACAAAATAACTGCAATTTGTTTGTTGCATCAGCCCGTCAGCTGGCAAAAGCTTTAGAAGTTCCATTGGTTAACGATTTAGGATATACAAAGAGATATGTGCGGTGCCTACAAATATCTGAAGTGGTAAATAGTATGAAAGACTTAATAGATTATAGCAGAGAAACAGGGACTGGACCTATGGACAGCTTAGCCAAATTCCCTCGGAGAACAAGTAATTCATCATCTGCACTTCATAGTCAGGTGCAACAGTCTGAAGATCAATTACAGCAGCAACAACAGCATATGGTGGCCCATAACTCAAATGGTGACCAAAATTCTTCACAAAATGCTGCCATGCAAATTCCTTCTAACAATGGTGTGGCTAATGTAAATAACAGTGTCAGCTCAGCACCTGCATCGACCACCACAAGCACCATTGTTGGGCTTCTCCACCAGAATTCAATGAATGCTAGACAGCAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGGTGGTTCTGCGCATATTCCATCCCCAGGTTCTTGTAATACAGTGCCACAAGCACAACCAAACTCGTCCCCTTTTCATTCACCAACACCGTCCTCATCTAACAATCCACAAACTTCTCACCCGGGCATAACATCTGGAAATCACATGAGTACAGCAAACTCGCCGGCTAATATTTCCTTGCAACAACAGCAGACATCAATTTCTGGTGATGCTGACCCTAGTAACGATGCTCAGAACTCCATGCACAAAATCATTCACGAGATGATGATGTCCTCCCAGATGAACGGAACAGGTGGAATGGTAGGATCTAATTCTCTCGGAAATGACATGAAGAATGTAAATGTTATCCTACCAGGGAGTACTAATACAGGCCTCAACGGTGGCAATGGCATGATGGTTAATGGAGGCGTGAACAATAATTCTAGTGTTGGGGTTGGTGGTTATGGCACAATGGGTCTTGGTCCATCTGGTTTACCGAATGGCATGAGGCCTGGAATGGGAAATAATTCAGTCATGAATGGAAGAGGAGGAATGACATCTATGGCTCGGGAACAGGCAATGAATCATCAACAGGATTTGTCAAGCCAACTACTTAGTGGATTAGGAGCAGTAAATGGTTTTAATAATCTTCAATTTGATTAG 2745 0.4463 MVPPGPPNPIGGAPSLSPSLMRTNSGMMGGQGGQASFPSLVSQRNQFNNMNMLGNMSNVASMMNQSFSNGIPNSGLGGLGSGQRGGMDAGAEQDPLSGVGNGMGFGNPSSSFGQANVANPGSSGQGQGQGQQFSNPSGNQLLSDQQHSQQLDVQNFQHNQQQSAQQFSAPMNTQQQQQQQQHHQQQQQHFQSMRGGIGGIGPVKMEPQVNSDQFGQQQQLSSLRSLAQVKLEPQQLQSMRGMATVKMEPQHSDQPFLHQQQQQQQQQQQQQLLHMSRQTSQATAAQMNLLQQQRLLQFQQQQHQQQLLKAMPQQQRSQIPQQFQQQNMPVRSPVKPAYEPGMCARRLTHYMYQQQHRPEDNNIDFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDIWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGQVAQKYQSCTQNAAPNLSVPELQNNCNLFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMDSLAKFPRRTSNSSSALHSQVQQSEDQLQQQQQHMVAHNSNGDQNSSQNAAMQIPSNNGVANVNNSVSSAPASTTTSTIVGLLHQNSMNARQQNSMNNASSPYGGGSAHIPSPGSCNTVPQAQPNSSPFHSPTPSSSNNPQTSHPGITSGNHMSTANSPANISLQQQQTSISGDADPSNDAQNSMHKIIHEMMMSSQMNGTGGMVGSNSLGNDMKNVNVILPGSTNTGLNGGNGMMVNGGVNNNSSVGVGGYGTMGLGPSGLPNGMRPGMGNNSVMNGRGGMTSMAREQAMNHQQDLSSQLLSGLGAVNGFNNLQFD 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01062 914 MobiDBLite consensus disorder prediction 17 33 - -
Trre1g01062 914 MobiDBLite consensus disorder prediction 593 669 - -
Trre1g01062 914 MobiDBLite consensus disorder prediction 247 279 - -
Trre1g01062 914 MobiDBLite consensus disorder prediction 253 279 - -
Trre1g01062 914 Coils Coil 618 638 - -
Trre1g01062 914 MobiDBLite consensus disorder prediction 603 669 - -
Trre1g01062 914 MobiDBLite consensus disorder prediction 103 193 - -
Trre1g01062 914 MobiDBLite consensus disorder prediction 690 755 - -
Trre1g01062 914 MobiDBLite consensus disorder prediction 1 33 - -
Trre1g01062 914 PANTHER LIM DOMAIN-BINDING PROTEIN 216 908 IPR029005 -
Trre1g01062 914 MobiDBLite consensus disorder prediction 73 221 - -
Trre1g01062 914 Pfam LIM-domain binding protein 346 600 IPR029005 -
Trre1g01062 914 MobiDBLite consensus disorder prediction 760 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01062 Trre-Chr1 8029269 8035228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01062 1 914 C2H2 Transcription Factor Family AT1G43850 56.590 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01062 - - gmx:100787573 1194.1