Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01045 ATGAAAAACAAAATGGCCCTTTTGTTCTTCTATTCAACAACTTTCATCATTGGAACAATGTTCTTAGTTTCTGTTGAAGCTGAACCAGTAGAAGATAAACAAGCTTTACTTGATTTCCTTCACAAAATGAACCATTCTACACATCTCAATTGGAACAAAAATTCTTCTGTATGTCGAAAATGGACACGAGTTATCTGCAACAAAGAACAATCAAGAGTTATATCTCTTCAGCTTCAAAATGTTGGATTGAATGGTTCAATTCCACCAAACACTATTAGTAAACTCTCAGCACTTGAAAATTTGAGTCTTGCATCAAATACTATAACTGGTTTTTTTCCTTCTGGTTTCAATAAGCTAAAAAATTTAACCTTTGTTTCTCTTCAATTTAACAAGTTTTCTGGTTCATTGCCATTAGATTTTTCTGTTTGGAAGAATCTAACTTTTGTTGATTTTTCTAACAATGGTTTTAATGGTAGCATACCTTTATCAGTTTCAAATTTGACTCATCTTAGTTCTTTGATTCTAGCTAATAACACTCTTTCTGGTGAAATTCCTGATATTAATATTCCTAGTCTCAAAGATCTCAATTTGGAAAACAATAATCTTAGTGGTTTTGTTCCTAAATCACTTTCTAGATTTCCTAGGTTGTCATTTTCAGGTAATAATCTTACATATGTAAATGTTTATTATCCTACAAATGTTCTTAAAAAAAGGACAAAAAACAAAGGACTTAAAGAACCGGTATTATTAGGTATCATCATCGGTGGTTCTATGTTAGGATTTTTAGTCTTAGGAGTTTTCTTGATTGTGTGTTTATATGAGAAACGCGGTGAAGATGGAAAAATTATTAAGTCTCAGAAGAGTAAAGAAGTTTTTTCGGAGAAAAAAGAAGCTTCGGAGAGTCTAGAACGAAACAAAATCGTCTTCTTTGAAGGTTGTAATCTTGTATTTGACTTGGAAGATTTGTTGAGAGCTTCTGCTGAGGTTCTTGGGAAAGGAACATTTGGTACTGTTTATAAGGCTGCTTTAGAGGATGCAACAACGGTCGCGGTTAAGAGGTTAAAGGAGGTTACAGTTGGGAAGCGCGAGTTTGAACAACGGATGGAGATTGTAGGGAGGATTAGACATGAGAATGTAGTTGCATTAAGGGCTTATTACTATTCAAAGGAGGAGAAACTTATGGTTTATGATTATTATGAACAAGGCAGTGTCTCATCAATGTTGCATGGCAAAAGAGGGGCAGAGAGGATTCCTTTAGATTGGGAAAGTAGGTTGAAAATAGCAATTGGTGTAGCAAGAGGCATTGCTCACATCCATGAAGAAAAACTAATCCATGGAAACATAAAAGCTTCAAACATTTTCCTCAACTCAAAAGGATATGGTTGTATATCTGACATTGGTCTAGCAACAATGATAATAAGTCCAATATCACCAAGAGCAAGAGGATACCTTGCGTCGGAAGTAACCGAAACTCGAAAAGCAACGCCAGCATCCGATGTCTATAGTTTCGGTGTATTGTTACTTGAACTTTTAACTGGAAAATCTCCCTTACATGGAGGTGAGGAAGTTGTTCATTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAAGAATGGACTTCTGAAGTGTTTGATTTGGAGTTATTGAGATATCCTAATATAGAAGAAGAAATGGTTGAGATGTTACAAATTGGTATGGCTTGTGTTGTAAGGTTACAAGATGATAGACCAAAAATGGATGAAGTTTTGAGAATGGTTGAGGAAATTCATAGGGCTAATAGTGGAAATAGACTTTCATCTGAATCTAGATCAGAATGTTCTACTCCAACTCCTCATGTGATTGAGACACCAACTTCTCTTGCAGATTGA 1866 0.351 MKNKMALLFFYSTTFIIGTMFLVSVEAEPVEDKQALLDFLHKMNHSTHLNWNKNSSVCRKWTRVICNKEQSRVISLQLQNVGLNGSIPPNTISKLSALENLSLASNTITGFFPSGFNKLKNLTFVSLQFNKFSGSLPLDFSVWKNLTFVDFSNNGFNGSIPLSVSNLTHLSSLILANNTLSGEIPDINIPSLKDLNLENNNLSGFVPKSLSRFPRLSFSGNNLTYVNVYYPTNVLKKRTKNKGLKEPVLLGIIIGGSMLGFLVLGVFLIVCLYEKRGEDGKIIKSQKSKEVFSEKKEASESLERNKIVFFEGCNLVFDLEDLLRASAEVLGKGTFGTVYKAALEDATTVAVKRLKEVTVGKREFEQRMEIVGRIRHENVVALRAYYYSKEEKLMVYDYYEQGSVSSMLHGKRGAERIPLDWESRLKIAIGVARGIAHIHEEKLIHGNIKASNIFLNSKGYGCISDIGLATMIISPISPRARGYLASEVTETRKATPASDVYSFGVLLLELLTGKSPLHGGEEVVHLVRWVNSVVREEWTSEVFDLELLRYPNIEEEMVEMLQIGMACVVRLQDDRPKMDEVLRMVEEIHRANSGNRLSSESRSECSTPTPHVIETPTSLAD 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01045 621 Gene3D Phosphorylase Kinase; domain 1 288 398 - -
Trre1g01045 621 FunFam pollen receptor-like kinase 1 293 398 - -
Trre1g01045 621 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 399 599 - -
Trre1g01045 621 MobiDBLite consensus disorder prediction 593 621 - -
Trre1g01045 621 PANTHER OS05G0588300 PROTEIN 16 598 - -
Trre1g01045 621 ProSiteProfiles Protein kinase domain profile. 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01045 621 SUPERFAMILY L domain-like 46 226 - -
Trre1g01045 621 Gene3D Ribonuclease Inhibitor 30 239 IPR032675 -
Trre1g01045 621 FunFam Probable inactive receptor kinase RLK902 29 188 - -
Trre1g01045 621 SUPERFAMILY Protein kinase-like (PK-like) 328 589 IPR011009 -
Trre1g01045 621 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre1g01045 621 ProSitePatterns Protein kinases ATP-binding region signature. 330 361 IPR017441 GO:0005524
Trre1g01045 621 Pfam Protein tyrosine and serine/threonine kinase 328 583 IPR001245 GO:0004672|GO:0006468
Trre1g01045 621 Gene3D Transferase(Phosphotransferase) domain 1 399 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01045 Trre-Chr1 7917784 7919808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01045 6 609 Receptor kinase-like Gene Family AT4G23740 55.781 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g01045 PK_Tyr_Ser-Thr 6.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01045 - - aprc:113851984 843.188