Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01039 ATGGAACAACAACAACAGAGTATCCTATGTAAAACCACTGTCCACCAAACAGTTACTAAGAAATTCACAAAATCAAAGAAGAGAAATGACACTAATAGTAACCAAATCGAATTACCACGAGTGATTCGATTAACGGTTACTGATGCAGATGCTACTGATTCTTCAAGCGATGAAGAAACACAAACACAGTGTTTGATTCCCCGTAGGAGAATCAAACACTATGTTAATCAGATTGAAATTGAAACCGTTGCCTTAACAACGGTTTCTGGTAATAAGAAAAGGTCTTCAAGAGAAACTAAATTGAAAAATTCCCGAAGACCGGAGAAGAAAGTTGCTGCTGCTGTTGGTGGTGCTGCTCGAGATGAAAGAAAATTCCGCGGTGTTCGGATGAGACCGTGGGGAAAATGGGCGGCAGAGATTCGAGATCCGGGGACTCGAGTTCGGTTATGGTTGGGAACATTCAACACTGCTGAAGAAGCTGCTATGGTTTATGATGCTGCCGCAATTAAGTTTCGCGGCAAAGATGCTGTTACAAACTTCGGTGTACCGGAGTTTGAAAATGCTGAAAAAATGGAAGTTGTTAAGGAAAAAACAAAAATCAATATTAATAATGTGAAGACGGAGATTTCCGGTTCCGGTGAAGATTCCGGCGATGAATTTGTTAATCTATCTTCTCCGACGTCTGTTCTCCGGTTTATACGGGAGGAAATGAATGAAAATGTGAAATCATCTTTTAATGAAGATGAGCCTGTTGAACAGGTTGAACCGGTTGAACTGGTTGAACCGTTTAGTGAATGTGAAGGTGAGACGAGGTTTTTCGAAGAAACTAATGAGTTTTTTCGACAAGAAATCGATGATGTTTTCAATTTTCCAACAACTAATGAATGTTTTTCAAGTATGTTTAATGAAGCTCCTATGGAATTTTTTGATGAAACGACAGAGGTTTTGGTTAATGAGTGTCGTTTTAGTGATCATGTGGAATTTGATAAAACGCACTCACCTTCATCATTGTCATTATCATCAGCAGCTTTATGTGAAGGGGATGATATTCTTGATGATATTTTGTCAGGATTAGAACCTCTTGTTGTGCTTTGA 1095 0.39 MEQQQQSILCKTTVHQTVTKKFTKSKKRNDTNSNQIELPRVIRLTVTDADATDSSSDEETQTQCLIPRRRIKHYVNQIEIETVALTTVSGNKKRSSRETKLKNSRRPEKKVAAAVGGAARDERKFRGVRMRPWGKWAAEIRDPGTRVRLWLGTFNTAEEAAMVYDAAAIKFRGKDAVTNFGVPEFENAEKMEVVKEKTKININNVKTEISGSGEDSGDEFVNLSSPTSVLRFIREEMNENVKSSFNEDEPVEQVEPVELVEPFSECEGETRFFEETNEFFRQEIDDVFNFPTTNECFSSMFNEAPMEFFDETTEVLVNECRFSDHVEFDKTHSPSSLSLSSAALCEGDDILDDILSGLEPLVVL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01039 364 MobiDBLite consensus disorder prediction 93 109 - -
Trre1g01039 364 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 38 263 - -
Trre1g01039 364 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Trre1g01039 364 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Trre1g01039 364 MobiDBLite consensus disorder prediction 89 109 - -
Trre1g01039 364 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
Trre1g01039 364 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677
Trre1g01039 364 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Trre1g01039 364 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Trre1g01039 364 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Trre1g01039 364 CDD AP2 124 180 IPR001471 GO:0003700|GO:0006355
Trre1g01039 364 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01039 Trre-Chr1 7869855 7870949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01039 10 301 AP2-EREBP Transcription Factor Family AT4G27950 37.695 9.06e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g01039 AP2 5.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01039 - - psat:127091686 400.593