Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01033 ATGGAGCACGGAAGCCCTTCATCTAACCACAATCGTTCAACAAAATCAAGTTCAGAAGGCGAGGAAGCGCAGATTCCCATTGTGCATTTGGCAAGAATTATGCGGCGTGCTCTTCCCCTAAATGCGAAAATCAAGAATAGTGCTAAGGAGTCAATTCAATGGTGCGCGTCTGAATTTATGGGCATCATTACGACTCAGGCTAACGAGCGATGCAAGGCAGAGAATCGAAAGATCGTTACAGCAATTGATTTAATATTGGCCATGGAAAGGTTCGGCTTTGATGACTATGTTGGGCCTCTCAAGCTTTACCTCAAAAACTATCGCGGCCATAAAGATCGGACGATTCAAACCAATGGCATACCCATTAAATTTGGGTTCAATAAGAATGGGTTTGATGCTAGTGGTTCGAACAAAAGCAATGCTAATGGGCAACGTTGA 438 0.4384 MEHGSPSSNHNRSTKSSSEGEEAQIPIVHLARIMRRALPLNAKIKNSAKESIQWCASEFMGIITTQANERCKAENRKIVTAIDLILAMERFGFDDYVGPLKLYLKNYRGHKDRTIQTNGIPIKFGFNKNGFDASGSNKSNANGQR 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01033 145 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g01033 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre1g01033 145 SUPERFAMILY Histone-fold 21 111 IPR009072 GO:0046982
Trre1g01033 145 MobiDBLite consensus disorder prediction 1 22 - -
Trre1g01033 145 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Trre1g01033 145 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Trre1g01033 145 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Trre1g01033 145 Gene3D Histone, subunit A 11 140 IPR009072 GO:0046982
Trre1g01033 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01033 Trre-Chr1 7818251 7819846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01033 11 108 CCAAT-HAP3 Transcription Factor Family AT5G47670 49.057 1.31e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre1g01033 CBFD_NFYB_HMF 4.4e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01033 K08065 - gmx:100810059 108.227