Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01032 ATGGAAACTCAAAAAGTTCCAATAGATGATGACACCTTATTATTATCTAATATTTTCAATGAGACAGAGTTTGGATCAGAAGATCTCTTTTCCATTTTGGAAAATTTCAACAACTTTCCTCCCATTATAAATGAGCAAAACTCAAAAACAACTTCTTCAACTGCTCTTCAAGATTTTGAAACTGAGGTTGCTGAAACATCACAAAAATGCAAGAGACAGAAGATTGTTCCTAGTTCTATAGAGGAACCAAATAACAATGATGGACAACCTAGAATGTCGCATATCGCGGTGGAGCGCAATCGAAGGAAGCTAATGAATGAGCAATTATCTATCTTGAAGTCACTTATGCCTTGCTTTTATGTCAAACGAGGAGACCAAGCATCAATAGTTGAAGGAGTAATTGATTACATAAATGAGTTACATCAACTAGTACAATGCCTAGAATCCAAGAAACAAAGAAAAGTTTACAATGAAGTACTAAGTCCAAAACTATTAATTTCAAGTCCAAGACCTTCACCACTAGTTAGTCCTAGAACAATCTTACCAATTAGTCCAAGAACTCCACATTCACAACAATGGTTACAACAATGTGGTGGTTATCTTTCATCTGAGCCATCTCCTACTTCTTCGGCGTCTTCCATCAACGACAACATCAACGAGCTTGTCGCAAATTCAAAGTCTTCGGTAGCTGATGTTGAGGTTAAGTTTTGTGGTTCACATTTGCTTTTGAAAACAGTTTCATCGCGAATTCCCGGACAAGCTTTGAGAATAATGTCTGTTCTTGAAGATCTAGCTCTTGAAATTGTTCATGCGAGTGTTAATACTGCTGATGAAACCATGTTAAACTCTTTCACTATTAAGATTGGAATTGAATGTCAACTCAGTGCTGAAGAACTTGCTCAACAAATCCAACAAACATTCTGTTAA 927 0.3635 METQKVPIDDDTLLLSNIFNETEFGSEDLFSILENFNNFPPIINEQNSKTTSSTALQDFETEVAETSQKCKRQKIVPSSIEEPNNNDGQPRMSHIAVERNRRKLMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYINELHQLVQCLESKKQRKVYNEVLSPKLLISSPRPSPLVSPRTILPISPRTPHSQQWLQQCGGYLSSEPSPTSSASSINDNINELVANSKSSVADVEVKFCGSHLLLKTVSSRIPGQALRIMSVLEDLALEIVHASVNTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01032 308 Gene3D - 81 155 IPR036638 GO:0046983
Trre1g01032 308 PANTHER TRANSCRIPTION FACTOR FAMA 23 307 IPR044283 GO:0003700|GO:0010052
Trre1g01032 308 SMART finulus 95 146 IPR011598 GO:0046983
Trre1g01032 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 156 IPR036638 GO:0046983
Trre1g01032 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Trre1g01032 308 MobiDBLite consensus disorder prediction 72 91 - -
Trre1g01032 308 Pfam Helix-loop-helix DNA-binding domain 91 140 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01032 Trre-Chr1 7807795 7810372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01032 19 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 43.787 1.15e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g01032 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01032 K20558 - gmx:100777437 337.035