Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01030 ATGGCATCAGTGTCTACTCAACCACAGTTTCGTTACACGCAGCCACCATCAAAGGTGCTTCATTTGAGAAACTTGCCATGGGAGTGTATAGAAGAGGAGCTAATTGAACTTGGAAAGCCATTTGGTAAAGTTGTGAACACAAAGTGCAATGTTGGAGCAAATCGAAATCAAGCTTTTATTGAATTTGCAGATATAAATCAAGCCATTGCGATGATATCATATTATGCTTCATCATCAGAGCCTGCTCAAGTACGGGGGAAAACTGTGTATCTGCAGTATTCCAATAGACAAGAAATAGTGAATAATAAAACTGCTGCGGACGTTGCTGGAAATGTACTGTTGGTAACAATTGAGGGTGCAGATGCACGCCTTGTGAGCATAGATGTTTTGCACTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACTTTTGAGAAGACAGCTGGATTCCAGGCACTGGTGCAATTCTCAGATCAAGAAACTGCCACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGCTACCTGCTCCCTGGGCATGTGGGACCATGTACCCTTAAAATCACATACTCTGGACATTCAGACTTAAGTGTCAAGTTTCAAAGTCACAGAAGCAGGGACTACACTAATCCTTACCTTCCTGTTGCTCAATCAGCTATGGAGGGAAACGGGCAGTCCGTGATGGGCTTGGATGGGAAGAGACTGGAAGCCGAGAGTAATGTTCTTCTTGCATCAATTGAGAACATGCAGTATGCTGTAACCTTGGATGTCTTGCACATGGTTTTTTCTGCTTTTGGACCCATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTAGTTCAATATCCAGATGTTCAAACAGCCATCGTGGCCAAGGAAGCCTTGGAAGGACACTGCATCTATGATGGGGGATTTTGCAAGCTTCACCTCTCCTATTCACGTCATACTGATCTGAGTATAAAGGTCAATAATGACAGAAGCAGAGACTATACCATGCCTACTGCACCGCCACCAGTTATGAACGTTCAGCCCTCAGTTTCAGGGCAACAACAAGCTCCCATGACTGGTCCACCTTCTCAACAGTACAATACCGCTCAGTACGCTCCAAGTAACAACCAGAATTTTATACCTCAATCTCAGGCTGGATGGGGAACAGGTCCACCAGCACCGCACCCTATGCAACAACAACAACAACGGATGCATCATAATCCTTACATGCCACCTGGTACGATGCCACCACAAGGTGGCCCTGGAATGATGCAGTATCCCGGTCACATTCATCAATAG 1311 0.4462 MASVSTQPQFRYTQPPSKVLHLRNLPWECIEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDQETATSAKDALDGRSIPSYLLPGHVGPCTLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGNGQSVMGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSAFGPIQKIAMFDKNGGLQALVQYPDVQTAIVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTMPTAPPPVMNVQPSVSGQQQAPMTGPPSQQYNTAQYAPSNNQNFIPQSQAGWGTGPPAPHPMQQQQQRMHHNPYMPPGTMPPQGGPGMMQYPGHIHQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01030 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 179 IPR000504 GO:0003723
Trre1g01030 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 73 IPR000504 GO:0003723
Trre1g01030 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Trre1g01030 436 CDD RRM2_PTBPH1_PTBPH2 110 204 IPR034793 -
Trre1g01030 436 Gene3D - 112 222 IPR012677 -
Trre1g01030 436 Gene3D - 242 345 IPR012677 -
Trre1g01030 436 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
Trre1g01030 436 CDD RRM3_PTBPH1_PTBPH2 243 339 IPR034794 -
Trre1g01030 436 MobiDBLite consensus disorder prediction 352 412 - -
Trre1g01030 436 FunFam Polypyrimidine tract-binding protein-like 2 242 347 - -
Trre1g01030 436 SUPERFAMILY RNA-binding domain, RBD 250 343 IPR035979 GO:0003676
Trre1g01030 436 CDD RRM1_PTBPH1_PTBPH2 16 96 IPR034792 -
Trre1g01030 436 SUPERFAMILY RNA-binding domain, RBD 125 218 IPR035979 GO:0003676
Trre1g01030 436 FunFam Polypyrimidine tract-binding protein homolog 2 5 111 - -
Trre1g01030 436 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 6 415 - -
Trre1g01030 436 Gene3D - 5 111 IPR012677 -
Trre1g01030 436 SMART rrm1_1 247 317 IPR000504 GO:0003723
Trre1g01030 436 SMART rrm1_1 19 92 IPR000504 GO:0003723
Trre1g01030 436 MobiDBLite consensus disorder prediction 352 389 - -
Trre1g01030 436 Pfam RRM-like domain 242 321 IPR021790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01030 Trre-Chr1 7755240 7762043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01030 16 406 Eukaryotic Initiation Factors Gene Family AT1G71770 22.680 1.26e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01030 K14948 - gmx:100810102 726.857