Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01027 ATGAGTACTACTCAACAAGAGAAGTTTGTTCGGTTTCGGGCTTCTAATTCAGAGGTTTCTGAGAGAAATTATGCTGCATTTAAGACAACAGAGTCGGGGAGATTTAGAAGTACATTAAGTTCATTTTCGGAGAAGTTTCAAAGAGGACTGGAATCTGGTTCTGAGAGGATAAAGAGGTTTAGAACAACATTCGACTCTTTTCACAATGACAATGCTCTTTCTAGAAACTTTGGTTCTAAAAGGAAAATCCTCGATCCACAAGGACCATTCCTTCAACGGTGGAACAAGATATTTGTCTTACTATGTGTTATTGCTGTATCATTGGATCCTTTGTTCTTCTATGTGCCTGTGATTGATGGCGAAAATAAATGCCTTTCATTGGACAGAGGGATGGAGATTACAGCCACTTTTTTGAGAACTTTCTCTGATGTTTTTTATATAATCCACATGATTTTCCAGTTTCGTACTGGATTCATTGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTCGAAGATTCTTGGGTAATTGCTAAGAGGTATCTGTCATCATATTTCTTAGTTGACATTCTTGCGATTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATCCCGAAGATGAGTGGCTTTGAATCACTCAATACAAAGAACATGCTGAAAGTTGTTGTTTTCTTCCAATATGTGCCTCGGTTATTACGAATAGTTCCATTATATAAGGAAGTTACAAGAACATCTGGTATTCTCACTGAAACAGCTTGGGCGGGAGCTGCATTCAATCTGTTTCTTTACATGCTTGCAAGTCATGTCCTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAAAAACCACATGCTGGCTAAAAGCCTGTCGAAATAATCCCATCATGTGTAACAAAGCAGATATATATTGTAATGATCGGGGAGGGTTTAAGTCAATTTCGAACTTCTTGAATACTTCTTGCCCAATATTGGAGGAAGATAAAAAACAATTTGATTTTGGGATTTTCCTTGACGCCCTTCAATCCGGTGTTGTGGAGTCAAGAGATTTTACCGATAAACTCTTCTACTGTTTTTGGTGGGGCCTAAAAAATTTAAGTTCTCTTGGCCAGAACCTGGCAACGAGTACCGATTTTTGGGAAATCAATTTCGCAGTTTTCATTTCCATAGCTGGTTTGGTTTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACGACAAGATTGGAGGAAATGAGAGTAAAGAGGAGGGATGCAGAACAGTGGATGTCTCATCGGTTGCTTCCTGACAGCCTGAGAGAGCGAATTAGGCGGTATGATCAGTACAAATGGCAAGAAACAAGAGGTGTAGATGAAGACAGTTTAATTCATGATCTTCCCAAAGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTAGATTTACTGATGAGGGTGCCAATGTTTGAGAAAATGGATGGACAACTTTTGGACGCAATGTGTGACCGTCTCAAACCAATACTTTACACAGAACAAAGCTACGTTGTTCGGGAAGGGGATCCTGTCGACGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACCATAACAACCAACGGCGGAAGAACCGGCTTCTTCAACTCTGAGTTCTTAAAAGCCGGCGACTTCTGTGGAGAGGAGCTTCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCCACTAGGACGGTCCAAACCATCGTAGAAGTCGAAGCCTTTGCCCTAAAAGCCGACGATCTGAAGTTTGTGGCATCTCAGTTCCGACGCCTTCACAGCAAGCAGCTGCGCCACACTTTCAGATTCTACTCGCAACAATGGCGCACATGGGCTGCATGTTTTATACAAGCTGCTTGGCGGCGGTATAGCAAGAAGAAGCTTGAAGAGTCCCTTGTTGAAGAGGAGAACAGGCTGAAAGATGCATTGGCAAAGGCTAGTGGTAGCTCAGCAAGTCTAGGTGCTACCATATATGCTTCAAGGTTTGCTGCAAATGCACTCAGATTATTGCGACGCAGTGGCACCGCAAGGAAGACAAGGATGGCGGAGAGAATACCTGCTATGTTACTTCAGAAGCCTGAAGAACCTGACTTTACTGATGAAGATCAATAG 2154 0.4206 MSTTQQEKFVRFRASNSEVSERNYAAFKTTESGRFRSTLSSFSEKFQRGLESGSERIKRFRTTFDSFHNDNALSRNFGSKRKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDGENKCLSLDRGMEITATFLRTFSDVFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWVIAKRYLSSYFLVDILAILPLPQVVILIIIPKMSGFESLNTKNMLKVVVFFQYVPRLLRIVPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIERKTTCWLKACRNNPIMCNKADIYCNDRGGFKSISNFLNTSCPILEEDKKQFDFGIFLDALQSGVVESRDFTDKLFYCFWWGLKNLSSLGQNLATSTDFWEINFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYDQYKWQETRGVDEDSLIHDLPKDLRRDIKRHLCLDLLMRVPMFEKMDGQLLDAMCDRLKPILYTEQSYVVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTIVEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLVEEENRLKDALAKASGSSASLGATIYASRFAANALRLLRRSGTARKTRMAERIPAMLLQKPEEPDFTDEDQ 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01027 717 Pfam Ion transport protein 93 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre1g01027 717 Gene3D Helix hairpin bin 413 478 - -
Trre1g01027 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 712 - -
Trre1g01027 717 FunFam Cyclic nucleotide-gated ion channel 1 414 478 - -
Trre1g01027 717 CDD CAP_ED 487 618 IPR000595 -
Trre1g01027 717 Pfam Cyclic nucleotide-binding domain 508 598 IPR000595 -
Trre1g01027 717 SUPERFAMILY cAMP-binding domain-like 416 609 IPR018490 -
Trre1g01027 717 Gene3D - 94 411 - -
Trre1g01027 717 SMART cnmp_10 487 618 IPR000595 -
Trre1g01027 717 FunFam Cyclic nucleotide-gated ion channel 1 485 603 - -
Trre1g01027 717 Coils Coil 639 659 - -
Trre1g01027 717 ProSiteProfiles cAMP/cGMP binding motif profile. 487 571 IPR000595 -
Trre1g01027 717 SUPERFAMILY Voltage-gated potassium channels 85 409 - -
Trre1g01027 717 Gene3D Jelly Rolls 485 605 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01027 Trre-Chr1 7728297 7731406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01027 5 716 Ion Channels AT5G53130 76.602 0.0 1107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01027 K05391 - gmx:100801032 1169.07