Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01020 ATGAAGGACACGAAACGACACTCGTCGGAATCAACTCTCCGACGAGTAGATTCTGTTGAGGCAGTTACGAAATTGGAGAATGTTCACCGGAGGAGGTTGAAAATTCGGAGAATGAAGTATAGTTGTCACGCGAAGATCCACGTCGGAAATGACTCCGACGGTCGTACAGTGACGGAGAATGAGCGACCAGAGATTCATGAATCGGTTGAGATATCGCTGTCTTTAGCAACTTCTTCATCCTCGGAGGAGGAAGATCGGACCTCGAAGCGAAATGGATCAGAAGTTCTATCGTACGGTACGGTGTCGACGATAGGGACTAGGAAGGAAATGGAGGATGCGGTGAGTGTGGAGATAGGTTTTGCGGTTAAGAATAGTGAGAAGTGTGATTTCTTCGGTGTTTATGACGGTCACGGCGGAGCTCAGGTTGCGGAGGCGTGTAGAGAGAGATTGCATAAGGTTGTGGCGGAGGAGGTGGAGAGGTGTGGGAAGGATGATGAATGGGATTGGGAAAGAGTGATGGAAGGGTGTTTTGGTAAAATGGATAGTGAGGTGGCGGGTGATACAGCCGTTAGGACTGTGGGGTCCACAGCTGTTGTTGCAGTTGTTTCCACGACGGAGATTGTTGTTGCAAATTGCGGTGATTCTAGGGCGGTTATTGGAAGAGCCGGAGAAGCTATTGACTTGTCTACCGATCATAAACCGGACAGACCAGATGAGTTGATGCGAATAGAAGAAGCTGGTGGAAGGGTCATAAACTGGAATGGCCACCGTGTTCTTGGTGTTCTTGCCACTTCACGATCTATAGGAGATCAATATCTTCGACCATATGTAATATCGAAACCCGAAGTCACTGTGACAAAGCGAACCATCGACGATGAATTTCTCATACTAGCTAGTGATGGCTTGTGGGGTGTAATGTCAAGTGAAATTGCTAGCCAAATTGTAAGAAAATGCTTCAAAGGCCAAATTAGGAGAGTTTGTCATGGGGTTGGGAATCAAAGTAGTCGTGCTGCTGAAGCTGCAACACTATTATCTGAGATAGCGTTGGCAAAGGGTAGCAGAGACAATACAAGTGTCATAGTAGTTGACCTAAGAGGAACATTAACATCTAGTTAA 1116 0.4677 MKDTKRHSSESTLRRVDSVEAVTKLENVHRRRLKIRRMKYSCHAKIHVGNDSDGRTVTENERPEIHESVEISLSLATSSSSEEEDRTSKRNGSEVLSYGTVSTIGTRKEMEDAVSVEIGFAVKNSEKCDFFGVYDGHGGAQVAEACRERLHKVVAEEVERCGKDDEWDWERVMEGCFGKMDSEVAGDTAVRTVGSTAVVAVVSTTEIVVANCGDSRAVIGRAGEAIDLSTDHKPDRPDELMRIEEAGGRVINWNGHRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRTIDDEFLILASDGLWGVMSSEIASQIVRKCFKGQIRRVCHGVGNQSSRAAEAATLLSEIALAKGSRDNTSVIVVDLRGTLTSS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01020 371 MobiDBLite consensus disorder prediction 73 94 - -
Trre1g01020 371 CDD PP2Cc 97 364 IPR001932 -
Trre1g01020 371 SMART PP2C_4 87 362 IPR001932 -
Trre1g01020 371 Gene3D - 91 367 IPR036457 -
Trre1g01020 371 ProSiteProfiles PPM-type phosphatase domain profile. 97 364 IPR001932 -
Trre1g01020 371 MobiDBLite consensus disorder prediction 47 66 - -
Trre1g01020 371 SUPERFAMILY PP2C-like 93 365 IPR036457 -
Trre1g01020 371 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Trre1g01020 371 Pfam Protein phosphatase 2C 99 357 IPR001932 -
Trre1g01020 371 PANTHER PROTEIN PHOSPHATASE 82 364 IPR015655 GO:0004722|GO:0006470
Trre1g01020 371 FunFam Protein phosphatase 2C 51 90 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01020 Trre-Chr1 7660439 7664268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01020 98 365 PP2C-type Phosphatase Gene Family AT2G29380 54.196 2.19e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01020 K14497 - gmx:100807235 481.1