Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01019 ATGAACACTGTTTTACAATCTCATTATTCTTCCATTAAATGTCTTTCTTCACATGGATATCAAGTTTATGCTTTGAATTCTACACTTAAAATTAAGGATGTTACTTTGACATATTGTACAAAGTTGTATGATATGTCTTTTGTTCCAAAAGATGTTGTGTTTAGCAATGGAGTTGATCTTGTTTTAGGATGGGATACAAGTTGTAGCAATGGAAGTAAAACAGAACATGATTGTTACAACATTGTCAACGAATCTAATGGTGGAAGGAAAAAAGAGCAGATTCTAGTCACTATATTATATCATGTTCGATATCGAACTCGAAAAGAAGAAAATGAAGCAAGAATAGAGAAGTTCTTAGAAGATTATAGAGCATTAAAACCTACAAGGTATTCCTATTCAGACATAAAAAGGATCACAAACAATTTCAAGAATGAACTTGGACAAGGCGCGTATGGAACGGTGTACAAAGGTAAACTATCTGGCGACATATATGTTGCAGTCAAACTTCTCAAAACTTCGACAGGAAATGGACCTGAGTTCATCAACGAAGTAGGAACAATGAGTCAAATTCATCATGTCAATGTTGTTCACTTAGTAGGCTTTTGCGCCGACGGACACACACGAGCTCTAGTTTACGAGTATTTACCAAATGGTTCGTTGCAGAAATTCATTTCCACAACGGATTTCAAAAACCATTTTTTGAGTTGGGAGAAGTTACAAGAAATTGCGCTTGGAATAGCCAAAGGGATTGAGTATCTTCACCAAGGATGTGACCAAAGGATACTTCACTTCGATATAAAACCGCACAATATCTTACTTGACAATAACTTCACTCCTAAGATATCTGATTTTGGTTTGGCTAAGCTTTGTTCTAAGGATAAGAGTGCGGTTTCCATGACTGCGGCTAGAGGGACTATTGGTTATATAGCACCGGAAGTTTTTTCTAGGAATTTTGGGAATGTATCGTATAAGTCTGATGTGTATAGTTTTGGAATGTTGTTGCTTGAGATGGTTGGGGGAAGGCAAAATGTCGATGTTGTAGAAAAGAGAAGTGGTTTAGGGTATTTTCCGGAATGGATTTATAATTTGTTAGAACAAGGGGATGATTTGAGCGAACATATTGAGGTGGAGAAATACGCAAAAATAGCGAAGAAACTTGCGATTGTGGGACTTTGGTGTATTCAATGGCACCCGGTCGATCGTCCTTCAATGCAAGTTGTTGTTCATATGTTGGAAGGAGATGGAGAAAAGTTAAGTATGCCACCTAATCCATTTGCTTCTGCTGATCCTGCTATAATGAATGTGAGTTTAATTGGAAGGCACCTTCATAGAGAGTGA 1338 0.3714 MNTVLQSHYSSIKCLSSHGYQVYALNSTLKIKDVTLTYCTKLYDMSFVPKDVVFSNGVDLVLGWDTSCSNGSKTEHDCYNIVNESNGGRKKEQILVTILYHVRYRTRKEENEARIEKFLEDYRALKPTRYSYSDIKRITNNFKNELGQGAYGTVYKGKLSGDIYVAVKLLKTSTGNGPEFINEVGTMSQIHHVNVVHLVGFCADGHTRALVYEYLPNGSLQKFISTTDFKNHFLSWEKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDNNFTPKISDFGLAKLCSKDKSAVSMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNVDVVEKRSGLGYFPEWIYNLLEQGDDLSEHIEVEKYAKIAKKLAIVGLWCIQWHPVDRPSMQVVVHMLEGDGEKLSMPPNPFASADPAIMNVSLIGRHLHRE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01019 445 SMART serkin_6 140 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01019 445 Gene3D Phosphorylase Kinase; domain 1 113 214 - -
Trre1g01019 445 FunFam PR5-like receptor kinase 215 422 - -
Trre1g01019 445 SUPERFAMILY Protein kinase-like (PK-like) 123 412 IPR011009 -
Trre1g01019 445 ProSiteProfiles Protein kinase domain profile. 140 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01019 445 Gene3D Transferase(Phosphotransferase) domain 1 215 420 - -
Trre1g01019 445 Pfam Protein tyrosine and serine/threonine kinase 142 411 IPR001245 GO:0004672|GO:0006468
Trre1g01019 445 ProSitePatterns Protein kinases ATP-binding region signature. 146 168 IPR017441 GO:0005524
Trre1g01019 445 FunFam serine/threonine-protein kinase PBS1-like 106 214 - -
Trre1g01019 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Trre1g01019 445 PANTHER RUST RESISTANCE KINASE LR10-RELATED 111 426 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01019 Trre-Chr1 7633649 7635706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01019 94 431 Receptor kinase-like Gene Family AT1G66910 49.713 4.24e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01019 PK_Tyr_Ser-Thr 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01019 - - qsu:112031200 568.54