Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01018 ATGTCTTGGAAAATGCTTGTTAATCTAATTCTAATTGTGATTATGATCCTCCTAAACCCTCTTCTTTGCCTAACTGAATCAAATCATCAATGCTCCCATTCATCCTGTGGCAATATAGAAAACATTACCTACCCTTTTCGTCTAAAAGGCGATCCCGAAAACTGTGGAGATCCAAATTATGAACTTTCATGTGAGAACAATCAAACAATACTAAATCTATACAATGGAAAATACATTGTAGAATCCATCAACTACAATAATTCCACAATAAGAGTAACAGATTCAGGTCTCAACAAAGATAATTGCTCTTCAACTCCTCTCTACACTTTAACAAATGAAAATTTCACCACAGAAGAACCTTATAGATTGTTAGATAATAATAACTTAGAAACCATAGCATTTATAAACTGTGCAGCTTCAATTAATTCTCCTCTATACATTGATACTTCATCTTGTATCAAAGGATTAATCAACTCTTCCAATTATGCTGTGCTTGGTGAGTTGAAGTTATCTGAGTTGGAAGATTCATGTAGCATACTTGTGATGGTTATGATGATGACTTCAAATTTGAACAATAAATTTTCATATGTGAATATTCATCAGCAACTTGTTTATGGATTGGAGCTTTCTTGGCATGAGATATTCTGCAAAGAGTGTCAAGGTAGAGGGTATTGTAAGTTGAACATTAACAATGAAGTCATTGGTTGTTCAAGAACTAGACCTTGTAGTGATGACTATGCATCCTCTTTTAAATGTGCTTTAAGAGCGGTTACCGATACATTCGATGACTTGGTTGAAGGTCCTCACAAACTTGGAGCTATCATTGGACTAATTCTTCTAATAAGAATCATAGGAGGAGTACTATTTATCCCTATGTATATGATATATAAATGGAGAAGGAGGCATTTATCTGCATATGATTCAGTTGAAGAGTTTCTTAAAACTCACAACAATCTCATGCCGATACGATACTCTTACTCAGACATTAAAAAAATGACAAAAGGATTCAAGGATAAACTTGGTGAAGGTGGTTATGGTTCTGTTTACAAAGGACAACTTCGCAACGGTGACCTCGTAGCAATCAAGATGTTAGGTGGAAAATCAAGAGCAAATGGACAAGAATTCATCAATGAAGTTGCTACTATTGGAACAATCCATCATGTTAACGTTGTTCGCCTTATTGGATTTTGTGTTGAGAAAACAAAAAGAGCACTTGTTTATGAGTTCATGCCTAATGGTTCACTAGACAAACATATTTTCTCTAGAGAAAGAATGAATAATCCTTTGAGTTGCGAAAAAATGTTCGATATAGCTCTTGGTGTAGCGCACGGTATTGAATATCTACATAGAGGGTGTGATATGAGGATTTTGCATTTTGATATTAAGCCTCATAATATTCTTCTTGATGTGAATTTCAGTCCAAAGGTTTCGGATTTTGGACTTGCAAAGTTATATCCAATTGATAATAGCATTGTGTCGCTTACCGCTGCAAGAGGAACTATGGGATACATGGCGCCTGAATTGTTCTATAAGAACATTGGAGGAGTATCATATAAAGCAGATGTTTATAGCTTCGGAATGTTGTTAATGGAAATGTCGAGTAGGAGAAGGAATATGAATGAGGGTGAAGATCATAAGAGTCAAGTTTATTTCCCTTCTTGGGTTTATGATCAATTTAGCGAAGGGAAGGAAATAGAAATGGGGAATGGTACGGAAGAGGAAGAGAAGATATTGAAGAAGATGATAATAGTTGCATTGTGGTGTATACAGATGAAACCAAGTGATCGTCCTTCGATGAACAAAGTGGTTGAGTTGCTTGAAGGAGATGTTGAGTCCTTGGAAATGCCTCCTAAGCCATTTCAAACTCCGAAAGGAATGCCTGTACAAGGCATTGGACAATTCAGAAATCTACCTTGGTTGCTACCTGGAGATTCTACAAACTCACTTACAATTGTTATAAATCGACGTTAA 1971 0.3577 MSWKMLVNLILIVIMILLNPLLCLTESNHQCSHSSCGNIENITYPFRLKGDPENCGDPNYELSCENNQTILNLYNGKYIVESINYNNSTIRVTDSGLNKDNCSSTPLYTLTNENFTTEEPYRLLDNNNLETIAFINCAASINSPLYIDTSSCIKGLINSSNYAVLGELKLSELEDSCSILVMVMMMTSNLNNKFSYVNIHQQLVYGLELSWHEIFCKECQGRGYCKLNINNEVIGCSRTRPCSDDYASSFKCALRAVTDTFDDLVEGPHKLGAIIGLILLIRIIGGVLFIPMYMIYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKMTKGFKDKLGEGGYGSVYKGQLRNGDLVAIKMLGGKSRANGQEFINEVATIGTIHHVNVVRLIGFCVEKTKRALVYEFMPNGSLDKHIFSRERMNNPLSCEKMFDIALGVAHGIEYLHRGCDMRILHFDIKPHNILLDVNFSPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMSSRRRNMNEGEDHKSQVYFPSWVYDQFSEGKEIEMGNGTEEEEKILKKMIIVALWCIQMKPSDRPSMNKVVELLEGDVESLEMPPKPFQTPKGMPVQGIGQFRNLPWLLPGDSTNSLTIVINRR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01018 656 FunFam serine/threonine-protein kinase PBS1-like 304 409 - -
Trre1g01018 656 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Trre1g01018 656 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Trre1g01018 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Trre1g01018 656 Gene3D Transferase(Phosphotransferase) domain 1 410 615 - -
Trre1g01018 656 SUPERFAMILY Protein kinase-like (PK-like) 315 606 IPR011009 -
Trre1g01018 656 Pfam Protein kinase domain 337 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01018 656 PANTHER RUST RESISTANCE KINASE LR10-RELATED 306 622 IPR045874 GO:0004672
Trre1g01018 656 SMART serkin_6 334 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01018 656 CDD STKc_IRAK 340 608 - -
Trre1g01018 656 ProSiteProfiles Protein kinase domain profile. 334 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01018 656 FunFam PR5-like receptor kinase 410 618 - -
Trre1g01018 656 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01018 Trre-Chr1 7628651 7630952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01018 1 619 Receptor kinase-like Gene Family AT1G66910 36.322 8.30e-108 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01018 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01018 - - cam:101507916 1105.89