Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01016 ATGGTAAGCTGTTCAACTATTTTGATTGTCACAATTCTCATCGTGGTTTGCAATTTCAACACAGTGATATGGCGAGTTAATGGTTGTAGCCGGAGGGATTTCAGGTACGGACTTCATGGTCCGCCAGTCCGATTTCCCTTCCGACTTAAAGACATTGAAACAGAACATGGTTGCAGTTATAGCGGCTTTGATCTTACTTGTTCAGACACACACAAAACTCTACTTGAGCTTCCTTCAGATTCCGGTCCTATTAAACTCGAAGTCATAACAATAGATTATAAATTCCAACAATTACATGTTTCTGACCCTGAAAATTGCCTTCCAAGACAGTTTTTAAAGCTTCTTCAATCACAAATTTCTCCTTTTGAATTATTTCTGGATCCTGTCTACAGTTATAACATCACTTTCCTCCATTGCAGTTTGATGTCCTGCCCGGTTTTTGTTGCTTACTCTAGTGATACACTCCTTAATTCGGATTTGAACCCAATACTTTGCACTCCTTAA 504 0.3909 MVSCSTILIVTILIVVCNFNTVIWRVNGCSRRDFRYGLHGPPVRFPFRLKDIETEHGCSYSGFDLTCSDTHKTLLELPSDSGPIKLEVITIDYKFQQLHVSDPENCLPRQFLKLLQSQISPFELFLDPVYSYNITFLHCSLMSCPVFVAYSSDTLLNSDLNPILCTP 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01016 167 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 142 IPR046948 -
Trre1g01016 167 Pfam Wall-associated receptor kinase galacturonan-binding 40 102 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01016 Trre-Chr1 7619240 7619743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01016 43 139 C3H Transcription Factor Family AT2G25410 44.330 1.98e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01016 - - aip:107619931 127.102