Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01014 ATGACTTGTACTCACTGTACTTCTTCCCTCATGATAGCAATAATATTAATGCAGCTTGGGAATGGACAGAATATCCCATCCATGGTGTGTCCTTTCAATATATCTTGTACACAACATAACAAGATTCTTGAAATACCTGCTTATCCAGTCCCTATAAAACTCATAATAGATGACATTAACTACACATCTCAAATATTAGAAGCACATGATTCTGAGAATTGTCTTTCACGACTCCTCTATTCATCAATTTTTCCTTTTCGGATTCATGGTGCTGGCCATGGACATGGTTGGGCATTGGGCTATCATACCAATAATAGTTTTAATGTTAGTTTCTTTGATTGTTCTTCGCTAGGAAGCCTTGATTCGGTAATAGACCACCAAAATGGTGGAACTACTCAAGGCGGGATTTCTTGTCCTATTTATATCGCACGATTAAATGTAAATATAGTTCAATCTAACCTTGTATTCTGCACCAAACTGTCCCAACCAGTTTCGCCCTTTATTCTTTCAGATGAATCTCTAACGGGGATACGATTAAATTCAATCTCATTGACTTGGTCAGAAACAAATCTTGACAAAGGATGCTTCAAATGCAAGCACAAATCAAAGAAGAAGATTATTTTATCCACTGTAGGTGTAATCATTGGCTCAACTATGCTTGTACTTCTATTTGCCATTTTCAAAATATATCACTATATTAAGATGAATAAAGAAGATCATAAGAGAATTGAAAACTTTTTGAAGGATTATAGAGCTTCAAAACCAACTAGGTTCTCTTATGCAGATTTAAAGAGAATTACACATAATTTTAAAGATAAGTTAGGTGAAGGGGCTCATGGAGCTGTTTATAAAGGTAAATTGTCGAATGAAATTTTGGTTGCTGTGAAGGTTCTTAATAATGCAGAGGGAGATGGGAAGGAGTTCATAAATGAAGTGGGAACCATGGGCAAAATACACCATCTCAACGTGGTTCGTTTGCTTGGTTTCTGCGCAGATGGATTTCACCGTGCTTTGGTCTATGACTTTTTTCCAAACGGTTCGTTGGAGAAATTCATTTCTCCATTGAACAACAAAGATAATTTCCTTGGATGGGATAAGTTAGAACAAATTGCTCTAGGCATAGCTAATGGCATTGAGTATCTCCACCAAGGTTGTGATCAAAGAATTCTACACTTTGACATCAATCCTCATAATGTTTTGATAGATGACAATTTCACTCCCAAAATCACAGATTTTGGTTTGGCTAAGATGTGTTCGAAAAATCAAAGTATTGTATCCATGACTACAGCTAAGGGAACATTGGGCTACATGGCACCCGAAGTTTTTTCAAGAAACTTCGGAAATGTCTCATATAAGTCTGATATATACAGTTATGGTATGTTGTTATTAGAAATGGTTGGAGGAAGAAAGAATACAAAAACAACCAGTGGCGATGAAAATGTTCAAGTTGAGTATCCAGATTGGATCCATAATTTGCTTGAAGGAGGAGATATACAAATCCCTATCGACGAAGAAGGAGATTTTAGAATTGCAAAAAAATTGGCAACGGTGGGACTTTGGTGTATCCAATGGCACCCTTTGCATCGTCCGCCGATGAAAACTGTGGTACAAATGCTTCAAGGAGAAGGGGACAAGTTAAAAGTACCAAGCAATCCTTTCGGACCTACAACCACAACGACTACAATTGGTAATATTGCTGTAGAACGTATGAATTCGGAGTTGGATGTGATTGAAGAATTAGATTAG 1746 0.3694 MTCTHCTSSLMIAIILMQLGNGQNIPSMVCPFNISCTQHNKILEIPAYPVPIKLIIDDINYTSQILEAHDSENCLSRLLYSSIFPFRIHGAGHGHGWALGYHTNNSFNVSFFDCSSLGSLDSVIDHQNGGTTQGGISCPIYIARLNVNIVQSNLVFCTKLSQPVSPFILSDESLTGIRLNSISLTWSETNLDKGCFKCKHKSKKKIILSTVGVIIGSTMLVLLFAIFKIYHYIKMNKEDHKRIENFLKDYRASKPTRFSYADLKRITHNFKDKLGEGAHGAVYKGKLSNEILVAVKVLNNAEGDGKEFINEVGTMGKIHHLNVVRLLGFCADGFHRALVYDFFPNGSLEKFISPLNNKDNFLGWDKLEQIALGIANGIEYLHQGCDQRILHFDINPHNVLIDDNFTPKITDFGLAKMCSKNQSIVSMTTAKGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTTSGDENVQVEYPDWIHNLLEGGDIQIPIDEEGDFRIAKKLATVGLWCIQWHPLHRPPMKTVVQMLQGEGDKLKVPSNPFGPTTTTTTIGNIAVERMNSELDVIEELD 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01014 581 Pfam Protein kinase domain 270 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01014 581 FunFam serine/threonine-protein kinase PBS1-like 235 342 - -
Trre1g01014 581 Gene3D Transferase(Phosphotransferase) domain 1 343 549 - -
Trre1g01014 581 FunFam PR5-like receptor kinase 343 550 - -
Trre1g01014 581 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
Trre1g01014 581 SUPERFAMILY Protein kinase-like (PK-like) 248 539 IPR011009 -
Trre1g01014 581 PANTHER RUST RESISTANCE KINASE LR10-RELATED 234 557 IPR045874 GO:0004672
Trre1g01014 581 ProSiteProfiles Protein kinase domain profile. 268 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01014 581 Gene3D Phosphorylase Kinase; domain 1 241 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01014 Trre-Chr1 7600037 7601909 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01014 208 562 Receptor kinase-like Gene Family AT1G66910 45.580 1.20e-102 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01014 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01014 - - tpra:123893290 707.597