Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01012 ATGATTTGCAGTCACAGTACTACTTCCTTCATGCTAGCAATGACATTAATGCTAGTGCCGCTGCTAGGGAATCAACACGAACAGAATAACCCTTCGATTGGATGTCCTTTCAATCTATCTTGTTCACATCATAACAACATGATTCTTGAACTACCTGCTCATCCGGTCCCTATAAAACTCCGCGTAAGTTACATTAACTACACATCGCAAGTACTCCAAGCACATCATCTTGAAAATTGTCTTCCACGACTCTTACTTCAGCAGCACAATTTCACTTCATCAATTTATCCTTTTCAGATTGTCTCTTCGACGCCTTCACAATTTGATGATTTTACCAATATTAGTTTCTTTGATTGTTCTCCACTGCGACAACATCACCTGACAGACGGCTATTCGTATTATGCAAATTACGAACAGGTGCAGCAGGACATGATCTCTTGCCCAATTTATGTCGCAGCATTTTACGAAGATGTAGTTGAATTGAACCTTGTATCTTGCACCAAACTTCCTGAGCGAGATTTGCCTCTTATTCTTCCGGGAGATTCTGTGTATGGGATACAACAAAACTCAATGTTTCTGTCATGGTCAGAAACAAATCTTGATAAAGAATGCTTAGAATGTAAGCACAAATCAAAGAAGAAGACAGTAACCATCATTTTGTCTTCTGCAGGTGTAATCATTGGTTCGACGGTCCTTGTTCTTTTATGTGGTGCCATTTTTCAAATATATAGCTATTTTAAGATGAAAGGTGAAGATCATGAACGAATTGAAAACTTTTTGAAAGATTACAAAGCTTTAAAGCCAACTAGATTCTCTTATGCAGACTTAAAGAGAATTACACATAAATTTAAAGATAAGTTAGGCGAAGGGGCTCATGGAGCTGTTTACAAAGGTAAATTGTCGAACAAAATTTTGGTTGCTGTGAAGATTCTTAATAATGCAGAAGGAGATGGGAAGGAGTTCATAAATGAAGTTGGGACCATGGGCAAAATACACCATCTCAACGTGGTTCGTTTGCTTGGTTTCTGCGCAGATGGATTTCATCGTGCTTTGGTTTATGACTTTTTCCCAAATGGTTCGTTGGAGAAATTTATTTCGCCTTCGAATAACAAAGATAATTTCCTTGGATGGGATAAGTTACAACAAATTGCTCTAGGCATAGCCAATGGCATTGAGTATCTCCACCAAGGTTGTGATCAAAGAATTCTACACTTTGACATCAATCCTCATAATGTTTTGATAGATGACAATTTCACTCCGAAAATCACAGATTTTGGTTTGGCTAAGATGTGTTCGAAAAATCAAAGTATTGTATCCATGACTACAGCTAAGGGAACATTAGGCTACATGGCACCCGAAGTTTTTTCAAGAAACTTCGGAAATGTCTCATATAAGTCTGATATATACAGTTATGGTATGTTGTTATTAGAAATGGTTGGAGGAAGAAAGAATACAAAAACAACTAGTAGCGATGAAAATGTTCAAGTTGAGTATCCCGAATGGATCCACAATTTGCTTGAAGGAGAAAATATACAAATCCCTATTGATGAAGAGGGAGATTTCAGAATTGCAAAAAAACTAGCAACCGTTGGACTTTGGTGTATCCAATGGCACCCTTTGCATCGTCCACCGATGAAAACTGTGGTACAAATGCTTCAAGGAGAGGGGGACAAGTTAAAAGTACCAAGCAATCCTTTCGGACCTACAACTACAACTAACACAATTACTAATATGGTTGGTGAACGTATGAATGTGGAGTTGGATGTAATTCAAGAATTAGATTAG 1785 0.3776 MICSHSTTSFMLAMTLMLVPLLGNQHEQNNPSIGCPFNLSCSHHNNMILELPAHPVPIKLRVSYINYTSQVLQAHHLENCLPRLLLQQHNFTSSIYPFQIVSSTPSQFDDFTNISFFDCSPLRQHHLTDGYSYYANYEQVQQDMISCPIYVAAFYEDVVELNLVSCTKLPERDLPLILPGDSVYGIQQNSMFLSWSETNLDKECLECKHKSKKKTVTIILSSAGVIIGSTVLVLLCGAIFQIYSYFKMKGEDHERIENFLKDYKALKPTRFSYADLKRITHKFKDKLGEGAHGAVYKGKLSNKILVAVKILNNAEGDGKEFINEVGTMGKIHHLNVVRLLGFCADGFHRALVYDFFPNGSLEKFISPSNNKDNFLGWDKLQQIALGIANGIEYLHQGCDQRILHFDINPHNVLIDDNFTPKITDFGLAKMCSKNQSIVSMTTAKGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTTSSDENVQVEYPEWIHNLLEGENIQIPIDEEGDFRIAKKLATVGLWCIQWHPLHRPPMKTVVQMLQGEGDKLKVPSNPFGPTTTTNTITNMVGERMNVELDVIQELD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01012 594 SUPERFAMILY Protein kinase-like (PK-like) 264 552 IPR011009 -
Trre1g01012 594 ProSiteProfiles Protein kinase domain profile. 281 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01012 594 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Trre1g01012 594 PANTHER RUST RESISTANCE KINASE LR10-RELATED 247 569 IPR045874 GO:0004672
Trre1g01012 594 Gene3D Phosphorylase Kinase; domain 1 255 355 - -
Trre1g01012 594 Gene3D Transferase(Phosphotransferase) domain 1 356 561 - -
Trre1g01012 594 Pfam Protein kinase domain 283 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01012 594 FunFam serine/threonine-protein kinase PBS1-like 249 355 - -
Trre1g01012 594 FunFam PR5-like receptor kinase 356 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01012 Trre-Chr1 7584785 7586691 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01012 224 565 Receptor kinase-like Gene Family AT1G66910 47.126 6.21e-105 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01012 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01012 - - tpra:123893290 744.191