Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01009 ATGTCACTGATCACAGTAATCCTTTCACTGCTGCTGCTAGTGAACCTTGCAAATGGTCTGAGTGATGCATCCATTGGATGTCCCTTCAAGATCAAATGTACACATAACTTGAAGATTCTTGAACTTCCTACTCATCCAGTCCCAGTAAAACTCATAATCACTCACATTAGTTATAGTAATCAATGGTTAGATCTATCTGATCCTGGAAATTGTTTACCGAAACTCATCCTTGATCACAACCTTTTATCAATACTATTTCCTTTAAAGTTATTTAGTGAATATATAGGAAATATTAGTTTCTTTGATTGTTCTTCAGTAGTACAACTCAGAAACAGCAATAGTATGTACCGCGGTGCACAAGATATAAAATCTTGTCCAATTTATGTTGCTGATTCAGATCTCCAAAGTATAGTTGAATCTGATCTTGTATACTGCATCAAACTGTTTGACCGCGTATCTTCAATTGATGCACATAGTATTCGAAACAACATAATCCCATTTTCATGGTCTGGAACAAATTTTGACATACGATGCTTGAAATGTGAACACAAATCAAAGAAGAAGATTACACTCATTATTTTATCCTCTGCAGGTGTAATCATCGGTTCAACTTTGATAGTGTTTGCCCTTGGTGCTATTGTACGAATTCATCTCCATTTCAAAATGAAAGGCGAAGATCATACAAGAATCGAAAACTTTTTGAAGGATTACAAGGCTTTAAAGCCAACCAGATTCTCCTATGCTGACATAAAGAGAATCACAAATAAATTTAAGGATAAGTTAGGCGAAGGAGCTCATGGAGCTGTTTACAAAGGTAAATTATCGAGCCAAATTGTGGTTGCTGTTAAGATGCTAAATAACGCAGAGGGAGATGGGAAAGAGTTCATAAATGAAGTGGGAACTATGGGGAAAATCCACCATCTCAATGTTGTCCGTTTACTTGGCTATTGTGCCGATGGATTTCACCGTGCTCTAGTCTATGACTTTTTCCCAAATGGTTCGTTGCAGAAATTTATTTCACCTCCGAGCAACAAAGATAGTTTCCTTGGATGGGACAAGTTGCAACAAATTGCTCTAGGTATAGCCGGTGGAATTGAATATCTTCATCAGGGTTGTGATGAAAGAATTCTTCACTTTGACATCAATCCTCATAATGTTTTGATAGATGACAATTTCATCCCAAAAATTACGGACTTTGGTTTGGCGAAGATATGCTCGAAAAATCAAAGTATTGTATCTATGACAGCAGCCCGAGGAACATTAGGATACATGGCACCTGAAGTCTTTTCTAGAAACTTCGGCAATGTCTCTTATAAGTCTGATATATACAGCTATGGTATGTTGTTGTTAGAGATTGTTGGAGGAAGAAAGAATACAAACACAACCACAAATGAAGAAAATTTTGAAGTTTTGTATCCTGATTGGATCCATAGTTTGCTCGAAGGAGGCGACATACAAATCCCTATAGATGAAGAGGGAGATTTTAGAATTGCGAAAAAATTGGCAATCATTGGACTTTGGTGCATTCAGTGGCAACCTATGCACCGTCCGTCTATGAAAACCGTAATGCAAATGCTTCAAGGAGACGGAGACAAGTTAAAAGTTCCCTCCAACCCTTTTGGACCTACAACGTCAGCTAATACAACTACTAATATTGTTGCAGAACGTATAAACTTGGAGCTTGAAGTGATTGAAGAAATAGATTAG 1707 0.3732 MSLITVILSLLLLVNLANGLSDASIGCPFKIKCTHNLKILELPTHPVPVKLIITHISYSNQWLDLSDPGNCLPKLILDHNLLSILFPLKLFSEYIGNISFFDCSSVVQLRNSNSMYRGAQDIKSCPIYVADSDLQSIVESDLVYCIKLFDRVSSIDAHSIRNNIIPFSWSGTNFDIRCLKCEHKSKKKITLIILSSAGVIIGSTLIVFALGAIVRIHLHFKMKGEDHTRIENFLKDYKALKPTRFSYADIKRITNKFKDKLGEGAHGAVYKGKLSSQIVVAVKMLNNAEGDGKEFINEVGTMGKIHHLNVVRLLGYCADGFHRALVYDFFPNGSLQKFISPPSNKDSFLGWDKLQQIALGIAGGIEYLHQGCDERILHFDINPHNVLIDDNFIPKITDFGLAKICSKNQSIVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEIVGGRKNTNTTTNEENFEVLYPDWIHSLLEGGDIQIPIDEEGDFRIAKKLAIIGLWCIQWQPMHRPSMKTVMQMLQGDGDKLKVPSNPFGPTTSANTTTNIVAERINLELEVIEEID 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01009 568 PANTHER RUST RESISTANCE KINASE LR10-RELATED 226 545 IPR045874 GO:0004672
Trre1g01009 568 FunFam serine/threonine-protein kinase PBS1-like 224 329 - -
Trre1g01009 568 SUPERFAMILY Protein kinase-like (PK-like) 238 526 IPR011009 -
Trre1g01009 568 ProSitePatterns Protein kinases ATP-binding region signature. 261 283 IPR017441 GO:0005524
Trre1g01009 568 FunFam PR5-like receptor kinase 330 537 - -
Trre1g01009 568 Gene3D Transferase(Phosphotransferase) domain 1 330 536 - -
Trre1g01009 568 Pfam Protein kinase domain 258 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01009 568 ProSiteProfiles Protein kinase domain profile. 255 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01009 568 Gene3D Phosphorylase Kinase; domain 1 230 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01009 Trre-Chr1 7572675 7574474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01009 193 539 Receptor kinase-like Gene Family AT1G66910 46.218 2.83e-105 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01009 Pkinase 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01009 - - mtr:25488766 758.059