Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01008 ATGGAATCATTCATATGCTTCCTTCAAATTGTTAAGGTTGTTTTTTTGATACTATTACTACTGCATCATAATCATCAAACATGTGATGCAATTACAAATTATAGTAATAACCAAACATATTGTCCACCATCTTCATGTGGCAAAATCACAGACATAAAACATCCGTTTCGACTTAAGGGTGATCCAGCATCATGTGGTGATCCGAGGTACGAGTTATCTTGTGAAAACAACATGACAGTGTTAACTTTGTTTTCGGGTAAATACTATGTGAAGTCAATTGATTACAAATTCTACACAATTCGGTTAGTTGATCACGGAATTCAAGAGGGTAATTGCTCTTCCGTTCCTCGGTATTTCTTAACCAAATCTAATTTCACAAGTTCTTACAATTATAGTTACCGCGGGGATCCATATGAAGTCCCTTCTTCGCCTTGGGTGGGGAATGTACTATACTTGAACTGTAGCAAGCTAGTGAAGAACGATCCTAGGTATGTCGATACATCTCCCTGCGTCAAATGGAATTCCAAAGGCCATGTTTATGCTATCCTTAACGATATCAACACCGGGAGATTAAATGTTGGTTGTCATGTGAAACTTGTTGCTATGTCTTCGGCTTCTTCTTTGTTAGAGAATTTTTTCAGCGACAACACTTCACAAACTTTATCCTACGCTGAAATTCATGGAATTCTAAGCTATGGATTTGATCTTACTTGGGTGAGACGTGCCTGTGATGATTTTTGTGACACAAAACAGGATTGCCAGTTAAATAGAGAAATTGGAAAACTTGAATGTTATCTTGATTATTGCAGTACTCCATTAGGAAATTTCGTCAATTGTGAACATTTGTCAAAGTTGCGCATATTCATGGAAGATATTATACTTGGCATTGTTAAAGGATTGCTACAAATAAAGGGTACGACAAAAAGTTCCGAATTATCCCATGGAACCTTTGGATTACCTAAGAAAATGTCTGATTCGAAAGTTGGCATCGAAGTAGGAAGAGTCACAGGAAGATATCTCTTGCCACCATTTATAGTGAGATTTATATTGGGCCTCATGATTTTCTTTGTGCTGTTGATATATACATGTCGAAGAAGACATATTTCAGTTTACAAAAATATTGAAGTTTTTCTTCGTGGTAGTACCTTGATGCCAATAAGGTATTCATACAAAGATATAAAGAAGATGACCAGAAATTTCAAGGACAAGGTGGGCGAAGGAGGTTTTGGTTCTGTTTATAGAGGAAAGTTAAGCAGTGGACCATTTGTTGCCATAAAGATGTTGGGTAAACCTAAAGGTAGCGGACAAGATTTTATTAATGAAGTTGCAACCATAGGAATGATACATCATGCAAATGTGGTGAGACTTATTGGATTTTGTTTTGATAGATCAAAACGTGCTCTTGTTTATGAATTCATGCCGAACGGATCTCTAGATAAATATATTTCCTCTAGAGAAAATGCTATCTTCATAACTTCTAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGATGTGATATGCAAATATTGCATTTTGATATCAAACCCCATAACATCCTTCTTGACGAGAACTTTATCCCCAAAGTTTCAGACTTTGGTCTTGCAAAACTTTATCCAAATGACAATAGTATTGTCACTTTAACTGCCGCACGAGGAACAATTGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGTGTGTCCTACAAAGCTGATGTGTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAACAAGAGAAGAAATTTAAATCCAAATGCAGATCGTTCAAGCCAACTTTTCTTTCCGTTTTGGATTTATAGTCAATTGATTGAAGAAAGGGAGATAGAAATGGATGAAATTACTGATGAGGAAAAAAAAAGTAATGTGAAGAAAATGTTCATAATTGCGTTATGGTGTATACAGCTAAAACCAAGTGATCGTCCTGCAATGAACAAAGTAATAGAGATGCTTGAAGGAAATATTGAAGATATTGAAATGCCTCCAAAACCTTCTTTCTATCCAAATGAAATTATTGAGGACATTGAATCAGAAACTGATACCGACTCTGACTCTGTTTGTTTTATTGTGGAAGATACATCAAAGCCTCTATTGATGAATTTTGCTTGA 2163 0.3588 MESFICFLQIVKVVFLILLLLHHNHQTCDAITNYSNNQTYCPPSSCGKITDIKHPFRLKGDPASCGDPRYELSCENNMTVLTLFSGKYYVKSIDYKFYTIRLVDHGIQEGNCSSVPRYFLTKSNFTSSYNYSYRGDPYEVPSSPWVGNVLYLNCSKLVKNDPRYVDTSPCVKWNSKGHVYAILNDINTGRLNVGCHVKLVAMSSASSLLENFFSDNTSQTLSYAEIHGILSYGFDLTWVRRACDDFCDTKQDCQLNREIGKLECYLDYCSTPLGNFVNCEHLSKLRIFMEDIILGIVKGLLQIKGTTKSSELSHGTFGLPKKMSDSKVGIEVGRVTGRYLLPPFIVRFILGLMIFFVLLIYTCRRRHISVYKNIEVFLRGSTLMPIRYSYKDIKKMTRNFKDKVGEGGFGSVYRGKLSSGPFVAIKMLGKPKGSGQDFINEVATIGMIHHANVVRLIGFCFDRSKRALVYEFMPNGSLDKYISSRENAIFITSKKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMANKRRNLNPNADRSSQLFFPFWIYSQLIEEREIEMDEITDEEKKSNVKKMFIIALWCIQLKPSDRPAMNKVIEMLEGNIEDIEMPPKPSFYPNEIIEDIESETDTDSDSVCFIVEDTSKPLLMNFA 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01008 720 SMART serkin_6 398 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01008 720 FunFam PR5-like receptor kinase 473 681 - -
Trre1g01008 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
Trre1g01008 720 Gene3D Phosphorylase Kinase; domain 1 379 472 - -
Trre1g01008 720 ProSiteProfiles Protein kinase domain profile. 398 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01008 720 PANTHER RUST RESISTANCE KINASE LR10-RELATED 371 690 IPR045874 GO:0004672
Trre1g01008 720 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Trre1g01008 720 ProSitePatterns Protein kinases ATP-binding region signature. 404 426 IPR017441 GO:0005524
Trre1g01008 720 Pfam Protein kinase domain 401 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01008 720 FunFam serine/threonine-protein kinase PBS1-like 371 472 - -
Trre1g01008 720 SUPERFAMILY Protein kinase-like (PK-like) 382 670 IPR011009 -
Trre1g01008 720 Coils Coil 618 638 - -
Trre1g01008 720 Gene3D Transferase(Phosphotransferase) domain 1 473 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01008 Trre-Chr1 7568359 7572396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01008 38 701 Receptor kinase-like Gene Family AT5G38260 34.121 2.96e-105 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01008 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01008 - - tpra:123893228 1264.98