Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01007 ATGGCCAATTTTAACAATTTCCCCTTTCTACTAACTCTATTCTTTCTCCTATTAACAAAACCAGTAACATCCAAAAATCATTGCACTGAAAAATGTGGAAAGGTTCAAATTCAATTTCCATTTCATCTCAAAAGCAACATGAATCAAACCAATCCTAAAGGTTTTGAATTATCATGTACAGATAAAGATGAAACTGTTCTAGAATTTCCCAAACTTTCACTCAAGCTTTTCATCAAACAGATAGACTACAAATCACAAAAATTCCAAATCTATGATCCAAAGAATTGTCTTGCAAGTCAATTATTAAAACTAGGAAATTCATCAGTTTCACCTTTTCTGTTTCACTTCCATGAGTATAATATCCAGCGTAACGTTTCATTCTTTCATTGCAATTCGAATAACGGGTGTTTGATATTGCAGCGCGATGCTGATGGTGATTTTATTGATCCTGAATTGGTTTCTTGTAGAAAAGTGAGTGATGTTTTGAATGTTGGTTGGATGGTAGAACAATGGGAAGGTGACGGTACAGAGAATTTGTTTATGGAATGGTCTAAACCTAATTGTAGTTTTTGTGAAGTTCAAGGGCAAAAATGTAAATGGAAGAATGGTGGTAGAAATGGTGAAGTTCAATGTTTTGTTTGTAAATCAGATGGGATTGCAAGATCTACTGTTCTTCTCATTACTGCTGGGGTTATAGTTGGATCAATGGTTTTGCTGCTATTGGCAAATGGACTACTTCGAATTTATCGCTATTTTAAGATGAAAGGGGATGACATAGCAAGGATAGAGAAGTTCTTAGAGGATTATAGAGCAATGAAACCTACAAGATTCACTTATGCTGATATTAAGAGAATAACAAATGGTTTTAAGGAGAGTTTAGGAGAAGGAGCACATGGAGCAGTGTTCAAAGGCATGCTCTCCCAAGAAATTCTTGTAGCTGTGAAGGTACTCAATGAAACACAGGGAGATGGAAACGATTTCATTAATGAAGTCGGAACAATGGGAAAAATTCATCATGTCAATGTCGTTCGCTTGCTTGGATTCTGCGCCGACGGATTCCACCGTGCTCTTGTCTATGATTTTTTTCCAAATGGGTCGTTACAGAATTTCTTGGCACCACCGGAGAACAAGGATGTTTTTCTCGGTTGGGAAAAGTTGCAACAAATTGCTCTTGGTGTTGCTAGAGGGATTGAGTATCTTCATGTTGGTTGTGATCATAGAATACTTCACTTTGATATCAATCCACACAATGTGTTAATAGATGATAATTTGAGTCCTAAAATTACTGACTTTGGACTTGCTAAATTGTGTCCTAAAAATCAAAGCACGGTGTCTATGACCGCAGCTAGAGGAACATTGGGATATATTGCACCAGAAGTTTTCTCTAGAAATTTCGGAAATGTGTCTTATAAGTCTGATATTTATAGCTATGGAATGTTGTTGCTCGAGATGGTTGGAGGAAGAAAGAATACTGATGTGTCAGCCGAGGAAACATTCCAAGTTTTGTATCCGGGATGGATTCATAATCTGATTGAAGGTAAAGACGTACAAGTTAATATTGAGGAAGAGGGAGATGTTAAAATTGCAAAAAAGCTTGCCCTTGTCGGACTTTGGTGTATTCAATGGAATCCGGTGGACCGTCCGTCTATGAAAACTGTGGTTCAAATGCTTGAAGGTGAGGGAGAAAAATTAATGGCACCCCCTACTCCTTTTGACTCTATTGGTGCTAATGGAACAAATGCAGCTGTTCCAACTAGACATCTGAATTTTGAGTTAGAAGTTATTCCTGAAATTGAGTAA 1800 0.3717 MANFNNFPFLLTLFFLLLTKPVTSKNHCTEKCGKVQIQFPFHLKSNMNQTNPKGFELSCTDKDETVLEFPKLSLKLFIKQIDYKSQKFQIYDPKNCLASQLLKLGNSSVSPFLFHFHEYNIQRNVSFFHCNSNNGCLILQRDADGDFIDPELVSCRKVSDVLNVGWMVEQWEGDGTENLFMEWSKPNCSFCEVQGQKCKWKNGGRNGEVQCFVCKSDGIARSTVLLITAGVIVGSMVLLLLANGLLRIYRYFKMKGDDIARIEKFLEDYRAMKPTRFTYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKVLNETQGDGNDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQNFLAPPENKDVFLGWEKLQQIALGVARGIEYLHVGCDHRILHFDINPHNVLIDDNLSPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTDVSAEETFQVLYPGWIHNLIEGKDVQVNIEEEGDVKIAKKLALVGLWCIQWNPVDRPSMKTVVQMLEGEGEKLMAPPTPFDSIGANGTNAAVPTRHLNFELEVIPEIE 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01007 599 SUPERFAMILY Protein kinase-like (PK-like) 269 558 IPR011009 -
Trre1g01007 599 PANTHER RUST RESISTANCE KINASE LR10-RELATED 261 573 IPR045874 GO:0004672
Trre1g01007 599 FunFam PR5-like receptor kinase 362 567 - -
Trre1g01007 599 ProSiteProfiles Protein kinase domain profile. 287 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01007 599 Pfam Protein kinase domain 290 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01007 599 Gene3D Transferase(Phosphotransferase) domain 1 362 566 - -
Trre1g01007 599 Gene3D Phosphorylase Kinase; domain 1 262 361 - -
Trre1g01007 599 Pfam Wall-associated receptor kinase galacturonan-binding 28 92 IPR025287 GO:0030247
Trre1g01007 599 FunFam S-receptor-like serine/threonine-protein kinase 258 361 - -
Trre1g01007 599 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01007 Trre-Chr1 7564110 7566626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01007 184 570 Receptor kinase-like Gene Family AT1G66910 43.921 8.06e-105 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01007 Pkinase 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01007 - - gmx:100819302 874.004