Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01006 ATGATGAAAAAACAAGCTCAATTTTCTTGTTCATCATATTCATATTTACAAACACTAGTATCAATATTTGCAACAATTATTCTCCTTTTCCATCAAAATTCTCTAGCCAAGCATCACCAACCACCATGTCCAACTTCATCATGCGGCAAAATCCACAACATATCATATCCATTTCGTCTCAAAACCGATCCAAACCACTGTGGCGAGTCAAGGTACGAATTAGATTGCAACAAATATGGTGCATCATTAACTATGTTCTCGGGGAAATATTACGTACAACACATCGATTACAAGAGATATACAATTTCATTAAGTGACGCGGGTGCAGTGGAAGATACTAATACTAGTTGCTCTTCAATACCACGGTACTTTCTATACGACCTTAGTTTTCATAATATTCTTTATGGAGAACAGGATTTTGGATCTGAACCGTTCAATTTGGATGCAAATCCAACAAAAGTCGCGTATTTCAATTGTTCTGATCCAGTAAACGATCCACGGTATGCTACCGTGGACACAAGTCGTTGTACCATACGAGGAAATAGTCATGTGTATGCTGTTTTGGAACATTCAATGTCCGATTTTCGTTTTGAGGATATTAAGGTTGGGTGTGAGTTTATGGTGGCTACGTTGACTAAGGAATGGCTTAAGGACATTGGGAAGGGGAATGTTTCTTATGATGAGATTCATGAGTTGATTGTTGATGGATTTGAGGTTTCTTGGTTACCTGCGGTTTGTGAAAGTCGATGCGGAAAAGGGACAATTTGTAACGTTGTTGATGAAGAAAGCGGAGAAGTTCAATGTGGGAAGCGATTCTGTCATTATGCTTACCAAACAACCGATAAGTGCGAACTTCAACAGCAGATATTTGGTTATGTCCGAGCTTACCTTAGAGGCATTTTTATTGGACTTGGAAGTAGAATCACATTTAGCACAAGACAATTGGACAATCCAGTTGGACTAGAATATTTTGACGGAGGAATATTCATAGGAAGAAAGGTTATACCATATTTCATAGCAACCAGATTTCTATTTGGAGTTATAGTTCTACTTGTGCTATTTATCTATAAATGGAGAAGAAGACATGTATCAATGTATGATAACATTGAAAACTTTTTGCTAGAAAGCAATCTAAATCCAATTAGATATGAATACAAAGAAATCAAGAAGATGACAGGAGGTTTTAGAGTGAAATTAGGTCAAGGAGGTTTCGGTGCTGTTTACAAAGGAAAGCTAAGAAGTGGTCCGGATGTCGCAATAAAGATGTTGATAAAAACAAATGTTAATAATGGACAAGATTTTATTAATGAAGTTGCGACCATTGGAAGAATACATCATGTTAATGTAGTTCGTCTTGTTGGATATTGTGTTGAAGGAAAAAAGAGTGCACTGGTTTACGAGTTCATGCCGAATGGTTCGTTGGATAAATACATTTTCCCTAAAAAAGGAGTTGTCCCTTTGAGTTATGAGAAAATATATGAAATAGCTCTTGGAATAGCTCGAGGGATAGCGTATCTACATCAAGGTTGTGATATGCAAATTCTACATTTTGATATCAAGCCTCATAATATTCTTCTAGATGAAGATTTTGTTCCAAAGGTTTCGGATTTTGGACTTGCAAAGCTATATCCTGTGAACGATAGCATTGTTCCGTTAACTGCGGCCAGAGGTACTTTGGGTTACATGGCTCCTGAATTGTTCTACAAAAATATCGGAGGAGTTTCTTACAAAGCTGATGTGTATAGTTTTGGAATGCTTTTGATGGAAATGGCAGGTAAACGGAAGAACATGAATCCTAACGCAGAGCATTCGAGTCAACATTACTTCCCGTTTTGGATTTATGATCAATTTAAAGAAGAGAAAGATATCGAAATAATGGAAGATGTCTCCGAAGAGGGAATGACTATAGCTAAAAAGATGTTCATGGTCGCGCTTTGGTGTATTCAGTTGAAACCGAGTGGTCGTCCTTCAATGAACAAAGTAGTAGAGATGCTTGAAGGGAAAATGGAAAACATTGAACTACCTCCAAGGCCTTCTTTTTATCAAAATGAAAATTATAAGCATCATGAAGAAATCGATTCGGATCAATCATCATGGGGTGATTCCGCTAGTCTTGGTCAAACCTCGACTAATTGTTCATTGGATAGTTCCTCTTGTCAGCAGAACTTTGGTGCTGAGTGTGTGAGATTTTCTGGTTTGAAACTATGA 2208 0.3732 MMKKQAQFSCSSYSYLQTLVSIFATIILLFHQNSLAKHHQPPCPTSSCGKIHNISYPFRLKTDPNHCGESRYELDCNKYGASLTMFSGKYYVQHIDYKRYTISLSDAGAVEDTNTSCSSIPRYFLYDLSFHNILYGEQDFGSEPFNLDANPTKVAYFNCSDPVNDPRYATVDTSRCTIRGNSHVYAVLEHSMSDFRFEDIKVGCEFMVATLTKEWLKDIGKGNVSYDEIHELIVDGFEVSWLPAVCESRCGKGTICNVVDEESGEVQCGKRFCHYAYQTTDKCELQQQIFGYVRAYLRGIFIGLGSRITFSTRQLDNPVGLEYFDGGIFIGRKVIPYFIATRFLFGVIVLLVLFIYKWRRRHVSMYDNIENFLLESNLNPIRYEYKEIKKMTGGFRVKLGQGGFGAVYKGKLRSGPDVAIKMLIKTNVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSALVYEFMPNGSLDKYIFPKKGVVPLSYEKIYEIALGIARGIAYLHQGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPVNDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNMNPNAEHSSQHYFPFWIYDQFKEEKDIEIMEDVSEEGMTIAKKMFMVALWCIQLKPSGRPSMNKVVEMLEGKMENIELPPRPSFYQNENYKHHEEIDSDQSSWGDSASLGQTSTNCSLDSSSCQQNFGAECVRFSGLKL 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01006 735 Pfam Wall-associated receptor kinase galacturonan-binding 43 106 IPR025287 GO:0030247
Trre1g01006 735 Gene3D Transferase(Phosphotransferase) domain 1 469 676 - -
Trre1g01006 735 SMART serkin_6 393 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01006 735 PANTHER RUST RESISTANCE KINASE LR10-RELATED 366 685 IPR045874 GO:0004672
Trre1g01006 735 SUPERFAMILY Protein kinase-like (PK-like) 383 691 IPR011009 -
Trre1g01006 735 Gene3D Phosphorylase Kinase; domain 1 376 468 - -
Trre1g01006 735 CDD STKc_IRAK 399 667 - -
Trre1g01006 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Trre1g01006 735 ProSiteProfiles Protein kinase domain profile. 393 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01006 735 Pfam Protein kinase domain 398 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01006 735 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Trre1g01006 735 FunFam serine/threonine-protein kinase PBS1-like 364 468 - -
Trre1g01006 735 FunFam PR5-like receptor kinase 469 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01006 Trre-Chr1 7560481 7563294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01006 44 681 Receptor kinase-like Gene Family AT5G38260 35.913 1.81e-106 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01006 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01006 - - lja:Lj0g3v0275229.4 1011.91