Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01004 ATGAAAAAACAAGCTCTATTTTCTTGTTCATCATATTCATATTTACAAACACTAGTATCCATATTTGCTACAATTCTTCTCTTTTTCCATCAAAATTCTATAGCTAAGCATCACCAACCATGTCCAACTTCATCATGTGGCAAAATCCACAACATATCATATCCATTTCGTCTCAAAACCGATCCAAACCACTGTGGCGACTCAAGGTATGAATTAGATTGCAACGAATATGGTGCATCACTAACTATGTTCTCGGGGAAATACTACGCACAACACATCGATTACAAGAGATATACAATTTCATTAACTGACGCGGGTGCAGTGGAAGATACTAATTGCTCTTCCATACCACGGAACTTTCTATATGACCTTAGTTTCAATAGTTTTCTTTATGACGAACTGGATATTGGATCTGTGCCGTTCAATTTGGATCAATTTCCAGCAAAGGTCGCGTATTTCAATTGTTCTAATCCAGTTAAAGATCCATGGTATGTTACCGTGGACACAAGTCGTTGTAGCATACGAGGAAATAGTCATGTGTATGCTGTTTTGGAACCATCATTTTCTGAGTTTAGTTTTAAGGATATTGGGAAGGCGAATGTTTTTTATGATGAGATTCGTGAGTTGATTGTTGATGGATTTGAGGTTTCTTGGTTACCCGCGGTTTGTGAAAGTCGATGTGGAAAAGGGACAAATTGTAACGTTGTTGATGAAAAAAGTGGAGAAGTTCAATGTGGTAAGAGACTCTGTCATTATGTTTACCAAACAACCGATAAGTGCGAACTTCAACAGAAGCTATTTGGTTATGTCCGTGCTTACCTTAGAGGCATTTTTATTGGACTTGGAAGCAGAATCACATTTAGCAGAAGACAATTGGAAAATCCAATTGATCTAGACTATTTTAATGGAGGAATATTAATAGGAAGAACTATTATACCAATATTCATAGCAGTTAGATTTATATTTGGAATTACAGTTTTACTTGTGCTATTTATCTATAAATGGAGAAGAAGACATGTATCAATATATGATAACATTGAAAACTTTTTGCTAGAAAGCAATCTAAATCCAATTAGGTATGAGTACAAAGAAATCAAGAAGATGACCGGAGGTTTCAGAGTGAAATTAGGTCAAGGAGTTGCGACCGTTGGAAGAATACATCATGTTAATGTTGTTCGTCTTGTTGGATATTGTGTTGAAGGAAAAAAGAGTGCACTGGTTTACGAGTTCATGCCTAATGGATCGTTGGATAAATACATTTTCCCTAAAGAAGGAGTTGTCCCTTTGAGTTATGAGAAAATATATGAAATAGCTCTTGGAATAGCTCGAGGGATCGCGTATCTACATCAAGGTTGTGATATGCAAATTCTTCATTTTGATATCAAACCTCATAATATTCTTCTTGATGAAGATTTTGTTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTATATCCTGTGAATGATAGCATTGTTCCATTAACTGCGGCCAGAGGTACTTTGGGTTACATGGCTCCTGAATTGTTCTACAAAAATATCGGAGGAGTTTCTTACAAGGCTGATGTGTATAGTTTTGGAATGCTTTTGATGGAAATGGCAGGTAAAAGGAAGAACATGAATCCTAATGCAGAGCATTCGAGTCAACATTACTTCCCGTTTTGGATTTATGATCAATTTAAAGAAGAGAAAGATATCGAAATAATGGAAGATGTCTCGGAAGAGGGAATGACTATAGCTAAAAAGATGTTCATGGTTGCGCTTTGGTGTATTCAGTTGAAACCGAGTGGTCGTCCTTCAATGAACAAAGTAGTAGAGATGCTTGAAAGGAAAATGGAAAACATCGAACTACCTCCAAGACCTTCTTTTTATCCAAATGAAAATTATAAACATCATGAAGAAATCGACTCTGATCAATCATCATGGGGTGATTCCACTAGTCTTGGTCAAGCCTCGATTAATTGTTCATTGGATAGTTCCTCATGA 1983 0.3636 MKKQALFSCSSYSYLQTLVSIFATILLFFHQNSIAKHHQPCPTSSCGKIHNISYPFRLKTDPNHCGDSRYELDCNEYGASLTMFSGKYYAQHIDYKRYTISLTDAGAVEDTNCSSIPRNFLYDLSFNSFLYDELDIGSVPFNLDQFPAKVAYFNCSNPVKDPWYVTVDTSRCSIRGNSHVYAVLEPSFSEFSFKDIGKANVFYDEIRELIVDGFEVSWLPAVCESRCGKGTNCNVVDEKSGEVQCGKRLCHYVYQTTDKCELQQKLFGYVRAYLRGIFIGLGSRITFSRRQLENPIDLDYFNGGILIGRTIIPIFIAVRFIFGITVLLVLFIYKWRRRHVSIYDNIENFLLESNLNPIRYEYKEIKKMTGGFRVKLGQGVATVGRIHHVNVVRLVGYCVEGKKSALVYEFMPNGSLDKYIFPKEGVVPLSYEKIYEIALGIARGIAYLHQGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPVNDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNMNPNAEHSSQHYFPFWIYDQFKEEKDIEIMEDVSEEGMTIAKKMFMVALWCIQLKPSGRPSMNKVVEMLERKMENIELPPRPSFYPNENYKHHEEIDSDQSSWGDSTSLGQASINCSLDSSS 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01004 660 MobiDBLite consensus disorder prediction 621 646 - -
Trre1g01004 660 FunFam PR5-like receptor kinase 411 618 - -
Trre1g01004 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Trre1g01004 660 Pfam Protein kinase domain 381 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01004 660 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Trre1g01004 660 Gene3D Phosphorylase Kinase; domain 1 362 411 - -
Trre1g01004 660 PANTHER RUST RESISTANCE KINASE LR10-RELATED 380 627 IPR045874 GO:0004672
Trre1g01004 660 ProSiteProfiles Protein kinase domain profile. 273 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01004 660 Gene3D Transferase(Phosphotransferase) domain 1 412 616 - -
Trre1g01004 660 SMART serkin_6 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01004 660 SUPERFAMILY Protein kinase-like (PK-like) 363 636 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01004 Trre-Chr1 7549600 7552204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01004 11 623 Receptor kinase-like Gene Family AT5G38260 31.791 5.25e-85 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g01004 Pkinase 3.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01004 - - lja:Lj0g3v0275229.4 884.019