Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01002 ATGAAGGTCCTTAAGAAGATCTTGAAGGAAGGAGAGGGATATGAACAACCAAATGATGGAGCTATGATTCAAGTGAAACTTATCGGGAAGCTGCAAGATGAGACTGTCTTCCTTAAGAAGGGTCATGATGATGATCATCCATTTGAGTTCAGAATTGATGAAGAACCAGTAATTGATGGACTTGATAGAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCGTTGGTGATCATACAACTTGATCGAATGCTTTTGGTTAATCTGCTCAGGAATTGGCTACTGTTCCTCCTAATTCCACTGTTTACTATGAAGTTGAGCTGA 321 0.3988 MKVLKKILKEGEGYEQPNDGAMIQVKLIGKLQDETVFLKKGHDDDHPFEFRIDEEPVIDGLDRAVKNMKKGEIALVIIQLDRMLLVNLLRNWLLFLLIPLFTMKLS 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01002 106 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 79 - -
Trre1g01002 106 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 14 79 IPR001179 GO:0003755
Trre1g01002 106 Gene3D - 1 83 IPR046357 GO:0003755
Trre1g01002 106 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 20 78 IPR001179 GO:0003755
Trre1g01002 106 SUPERFAMILY FKBP-like 3 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01002 Trre-Chr1 7538543 7539082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01002 2 87 Calmodulin-binding Proteins AT3G25230 65.517 1.67e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01002 K09571 - ahf:112742476 132.88