Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01001 ATGGAACTGATGGCAAAGCTCATCCAATTGTACCAAATTTTAATTTTAATTTTTGCTCTTACAATTTTATTATTAGTAGTTGGAGATGATGAACCCCTTTCTTCAGCTTTACCTGGCTGCAAAAACACATGTGGAGATATTGAAATTCCATATCCATTTGGTATAGCTAATTCATCAATACCAAATCAAGGACCTTGTTATTTGGAGGAGCCTATGTTTAAGGTCACATGTATAAACAACTCCATATTATATTTTGGTGTTAATAGTGAGAACACAAATAGATCTTCACAAGTTTTACACATAGATGTCGTAAAAGGTCAAATCGAGTTGTTGTTTTATGTTGGAAGGTATTGTAGTAGTCGAAAGTACAATCGGCCGTGGCTTAGATGGCCATCGCGCAGTTTTACCATTTCAAGCAAAGAAAATAATTTCCTAACTGTTGGCTGCAACAGCTACGGCTATCTGAATAGTATTTACGATGGAGACACATACTCAACGGGATGCATAACAAGATGTAATGGAAATAAGAGGAAGATTCAAAATGGAACGTGTTCCGGTATTGGTTGTTGTCAAGTGGATATTCCAACGGACATGAGGAATATAAGTATCAGAGCATCTTATTTCCCTAATTCAACCGGAAATTTAGGATGCAGCGTTTCTTTTATTGTCAAACATGGATTCTACAACTTTTCAACCATTGATCTACATAATTTCCGTTATGATAAGGTCCCTTTAATTCTTGATTGGAGCGTAAGGAGCACGAAATGTAATGCTACCAAAAGTGGAGTCAATTATGCTTGCAGGAACAATAGCTTTTGTGATGATGAAGACATTGGTTATGGCTACCGATGCAAATGCAAGGAAGGTTATGAAGGAAATCCATATCATCCGGATGGATGCAAAGATATTGATGAATGTAAGACATCTAAACATACATGTTTAGATGAAAATCATTGTCGCAATACCGATGGGTCTTACAAATGTTTTTGTCCTGAGGGTCAAATTGGAAAAGGAACAAAAGAAGGAGGGTGTCGTGGACGAAATGTACTTGCAAAGGTCTCTATTGGAGCAAGTGTAGGTTTCATTATTCTATTTGTGGGGAGTTCAGCATTGTACTTGATATATCAGAGAAGAAAACTCAAACAGTTAAAAGAGAAATTCTTTCAACAAAATGGTGGTTTTATTTTGTTAAGCCAACTCTCTAAAAGAGAAGACACATCAAGAACTGCTCAAATATTCAAAGAAGAGGAACTTAAGAAAGCCACCCAAAACTACGATGAAAACTTAATCATCGGTAGAGGAGGTTTTGGTACAGTCTTTAAGGGAATTTTACCTGACAACAAAGTCGTTGCTGTCAAAAAGTCCAAAATAATAGACGAAAATCAAATTGAGCAATTCATAAATGAGGTGGTTGTTCTGTCCCAAATAAATCATAGAAATGTTGTCAAACTCTTAGGATGTTGTTTGGAGACACAAGTTCCTTTACTAGTATATGAATTTGTTAGCAACGGTACCCTTTTCGATTTCATGCACAACATAGATAATGCTAATAATGTAACGTGGAAAACATGTTTAAGGATAGCATCAGAGACCGCTGGAGCTTTATCGTATCTACATTCAGCTGCATCAATACCTATTATCCATAGAGACGTAAAAAGTACCAACATTCTCTTAGACGACAATTACACTGCAAAAGTGTCCGATTTCGGAGCATCAAGATTGGTTCCACTTGATCATACCGAGATAGCCACGGTGGTACAAGGAACTCTTGGATATTTAGATCCGGAGTATATGCAAACACATCAATTAACTGATAAAAGTGATGTTTATAGTTTTGGCGTAGTTCTTGTCGAGCTATTAACAGGAGAGAAACCTATTTCTTTTTATAGGCCAGAAGAGAGAAGAAACCTTTCTATTCACTTCCTATCTTGTCTACGAGAGAATCGCGTGTTGGAAGTTCTTCGATTTGGTATCTTGAATGATGATAACAAGGAGGAGATCAAAGAGGTTGCTATTCTTGCAGCAAAGTGCTTGAGACTTAAAGGAGAGGAAAGACCTAGCATGAAGGAAGTCGCTATGGAGTTGGAAGGTATGAGATTAGGGGAAAAACACCCTTGGACTAAATTAGAAATAAATCTAGAGGAGACTCAATCCTTACTTCAAGAAACATCATTTAACACTAATTATGAAACTGGTGATAGCAGCAACCATGGATATAGTGGCTATGACAGCTTGAAAGTTCATGCACCAATGTCCTTGAATGATGGAAGATGA 2274 0.3694 MELMAKLIQLYQILILIFALTILLLVVGDDEPLSSALPGCKNTCGDIEIPYPFGIANSSIPNQGPCYLEEPMFKVTCINNSILYFGVNSENTNRSSQVLHIDVVKGQIELLFYVGRYCSSRKYNRPWLRWPSRSFTISSKENNFLTVGCNSYGYLNSIYDGDTYSTGCITRCNGNKRKIQNGTCSGIGCCQVDIPTDMRNISIRASYFPNSTGNLGCSVSFIVKHGFYNFSTIDLHNFRYDKVPLILDWSVRSTKCNATKSGVNYACRNNSFCDDEDIGYGYRCKCKEGYEGNPYHPDGCKDIDECKTSKHTCLDENHCRNTDGSYKCFCPEGQIGKGTKEGGCRGRNVLAKVSIGASVGFIILFVGSSALYLIYQRRKLKQLKEKFFQQNGGFILLSQLSKREDTSRTAQIFKEEELKKATQNYDENLIIGRGGFGTVFKGILPDNKVVAVKKSKIIDENQIEQFINEVVVLSQINHRNVVKLLGCCLETQVPLLVYEFVSNGTLFDFMHNIDNANNVTWKTCLRIASETAGALSYLHSAASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDHTEIATVVQGTLGYLDPEYMQTHQLTDKSDVYSFGVVLVELLTGEKPISFYRPEERRNLSIHFLSCLRENRVLEVLRFGILNDDNKEEIKEVAILAAKCLRLKGEERPSMKEVAMELEGMRLGEKHPWTKLEINLEETQSLLQETSFNTNYETGDSSNHGYSGYDSLKVHAPMSLNDGR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01001 757 Pfam Protein kinase domain 427 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01001 757 FunFam Fibrillin 2 297 341 - -
Trre1g01001 757 ProSiteProfiles EGF-like domain profile. 302 340 IPR000742 -
Trre1g01001 757 Pfam Wall-associated receptor kinase galacturonan-binding 40 108 IPR025287 GO:0030247
Trre1g01001 757 SUPERFAMILY Protein kinase-like (PK-like) 407 695 IPR011009 -
Trre1g01001 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Trre1g01001 757 ProSiteProfiles Protein kinase domain profile. 425 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01001 757 ProSitePatterns Calcium-binding EGF-like domain signature. 302 328 IPR018097 GO:0005509
Trre1g01001 757 ProSitePatterns Protein kinases ATP-binding region signature. 431 454 IPR017441 GO:0005524
Trre1g01001 757 FunFam Wall-associated receptor kinase 2 501 718 - -
Trre1g01001 757 Pfam Calcium-binding EGF domain 302 337 IPR001881 GO:0005509
Trre1g01001 757 CDD EGF_CA 302 337 - -
Trre1g01001 757 SMART egf_5 255 301 IPR000742 -
Trre1g01001 757 SMART egf_5 305 345 IPR000742 -
Trre1g01001 757 FunFam Wall-associated receptor kinase 2 395 500 - -
Trre1g01001 757 Gene3D Laminin 253 344 - -
Trre1g01001 757 SMART egfca_6 302 345 IPR001881 GO:0005509
Trre1g01001 757 CDD STKc_IRAK 431 698 - -
Trre1g01001 757 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 35 707 IPR045274 GO:0007166
Trre1g01001 757 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Trre1g01001 757 SMART serkin_6 425 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01001 757 Gene3D Transferase(Phosphotransferase) domain 1 501 716 - -
Trre1g01001 757 SUPERFAMILY EGF/Laminin 300 336 - -
Trre1g01001 757 Gene3D Phosphorylase Kinase; domain 1 395 500 - -
Trre1g01001 757 Pfam Wall-associated kinase 182 287 IPR013695 GO:0004674|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01001 Trre-Chr1 7533518 7536378 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01001 40 757 Receptor kinase-like Gene Family AT1G21230 44.520 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g01001 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01001 - - gmx:100778914 945.266