Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00998 ATGGTAACAACAACATTTGCATCAAATGAATCATCTTCTACATCCCTACCCGGTTGCAAAAACAAATGTGGAAATGTCACAATTCCATATCCATTTGGAATATCAGAATCATCAATACCAAATCAAGGAACCTGTTACCTAGAGTCCAAATTTGAACTCAAATGTGAAAATGACACAAAATTAATTTGGGGCGATATGCAAGTTTACAACATAAACATTCTCGAAGGTGAACTAGAATTGACAACTTTTGTCTCCGGTTATTGTAATAGCACACATTCCAATCAACCCACTTTACAGTTAAGTAGTTCCGGTTTCAGCGTATCAAGCACGGAAAACAAGTTCATAACGGTTGGTTGTGACACTTACGGTTTTATTGATAGCATTGACAACAATGAAACATATACAACAGGTTGCTTAACAAGATGTAACGGTAATCGGAACAAAATTGAAAACGGAACATGTTCGGGTATTGGTTGTTGTCAAGCTGAGATTCCAAATATGATGAGGAATATAAGTGTAAATGTTTTCGAATTTCCTAATTCTACGGAATCTTATGGATGTAGCTATTCTTTTGTTGTTAAAGATGGATCGTATAACTTTTCAGTTTCTCATTTGGATTATTTTCCTTATGACAAGCTTCCATTGATACTTGATTGGAGTGTGGCAAAAAGTTGTAAGGAAGATGATTATGCTTGCAGGAAGAATAGCGATTGTGTTGATGTGGACAATATTGGTTTTGGTTATCATTGTAAATGTAAAGAAGGTTATGAAGGAAACCCTTATCATCCAGATGGCTGCATAGATATCGACGAATGTAAGACATTAAATAACACATGCATAAGTGAAAAACATTGTCGCAACACCATAGGGAGTTACGAATGCTTTTGTCCAGATGGACAATCTGGGAATGGAACATTGGAGGGAGGGTGTAATAGACGAGATCTTATAACCAAGATTGCGATTGGAACAAGTGCTGGACTCATTCTCCTATTTGTGGCGATTTCAATTCTATACTTGACATACCAAAAAAGGAAACTCATTAAACTAAAGCAAAAATTCTTTCAACAAAATGGTGGATCTATTTTGCTACAACAACTATCTACAAGGGATGACACATCGCAATCAGCTCAAATATTCACGGAAGAGGAACTTAAGAAAGCAACCAAAAACTACGATGAAAGCTTAATTATCGGTAGAGGGGGTTTTGGCACAGTTTTCAAAGGGATTTTACCTGACAACAAAATTGTCGCTGTAAAAAAATCCAAAATAATTGATGCGGATCAAATTGAGCAATTTATTAACGAGGTAGTTGTTTTGTCCCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGTTTAGAGACAGAAGTTCCTTCCTTGGTTTACGAATTCGTTAGCAATGGTACACTTTTCGACTTCATACAAAGTACTAAAGATAAAGCAAATAATCCAACATGGAAAACACGTTTAAGGATAGCTGCTGAGACAGCTGGAGCTTTATCGTATCTACATTCAGCAGCGTCAATACCAATTATTCATAGAGATGTTAAGAGTACCAACATTCTCTTGGATGAAAATTACACTGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTTCCACTCGACCAAACCGAGATAGCAACAATGGTGCAAGGAACTCTAGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACCGAGAAAAGTGATGTTTATAGCTTTGGCGTAGTTATTGCAGAGCTTTTAACCGGAGACAAACCTCTTACTTTTAATAGGCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTGTCTTGTTTGAAACAAGATAAAATATTTGAAGCTATTCAAGTTGGAGTTTTGAGTGATGATAACAAGAAAGAGATTAAGGAAGTTGCAATTCTTGCAGCAAGGTGTATGAGACTTAGAGGTGAAGAAAGACCGAGTATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGGTTAATGGAGAAGCATCCTTGGAATGATACAGAACAAAATTTTGAGGAGAATCAACGCTTGCTTCATGAGGCATCTTGTAGCATTTATAATGAAACTGGTGATAGCTATAATCCAGGACATACCATTGGGTATGATAGCTTGAGGGATCAACCATTAATTCCCTTGGATGATGGAAGATGA 2178 0.3669 MVTTTFASNESSSTSLPGCKNKCGNVTIPYPFGISESSIPNQGTCYLESKFELKCENDTKLIWGDMQVYNINILEGELELTTFVSGYCNSTHSNQPTLQLSSSGFSVSSTENKFITVGCDTYGFIDSIDNNETYTTGCLTRCNGNRNKIENGTCSGIGCCQAEIPNMMRNISVNVFEFPNSTESYGCSYSFVVKDGSYNFSVSHLDYFPYDKLPLILDWSVAKSCKEDDYACRKNSDCVDVDNIGFGYHCKCKEGYEGNPYHPDGCIDIDECKTLNNTCISEKHCRNTIGSYECFCPDGQSGNGTLEGGCNRRDLITKIAIGTSAGLILLFVAISILYLTYQKRKLIKLKQKFFQQNGGSILLQQLSTRDDTSQSAQIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKIIDADQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFIQSTKDKANNPTWKTRLRIAAETAGALSYLHSAASIPIIHRDVKSTNILLDENYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVIAELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGVLSDDNKKEIKEVAILAARCMRLRGEERPSMKEVAMELDGIRLMEKHPWNDTEQNFEENQRLLHEASCSIYNETGDSYNPGHTIGYDSLRDQPLIPLDDGR 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00998 725 Pfam Wall-associated kinase 152 253 IPR013695 GO:0004674|GO:0016020
Trre1g00998 725 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 7 674 IPR045274 GO:0007166
Trre1g00998 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Trre1g00998 725 Gene3D Transferase(Phosphotransferase) domain 1 467 690 - -
Trre1g00998 725 SMART egf_5 224 267 IPR000742 -
Trre1g00998 725 SMART egf_5 271 311 IPR000742 -
Trre1g00998 725 FunFam Wall-associated receptor kinase 2 361 466 - -
Trre1g00998 725 SUPERFAMILY EGF/Laminin 268 303 - -
Trre1g00998 725 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 285 296 IPR000152 -
Trre1g00998 725 FunFam Wall-associated receptor kinase 2 467 685 - -
Trre1g00998 725 SMART serkin_6 391 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00998 725 ProSiteProfiles Protein kinase domain profile. 391 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00998 725 Gene3D Laminin 222 308 - -
Trre1g00998 725 CDD EGF_CA 268 302 - -
Trre1g00998 725 SUPERFAMILY Protein kinase-like (PK-like) 372 662 IPR011009 -
Trre1g00998 725 ProSiteProfiles EGF-like domain profile. 268 306 IPR000742 -
Trre1g00998 725 Pfam Calcium-binding EGF domain 268 310 IPR001881 GO:0005509
Trre1g00998 725 FunFam Wall-associated receptor kinase 2 269 310 - -
Trre1g00998 725 Pfam Wall-associated receptor kinase galacturonan-binding 19 78 IPR025287 GO:0030247
Trre1g00998 725 CDD STKc_IRAK 397 665 - -
Trre1g00998 725 Gene3D Phosphorylase Kinase; domain 1 358 466 - -
Trre1g00998 725 SMART egfca_6 268 311 IPR001881 GO:0005509
Trre1g00998 725 Pfam Protein kinase domain 393 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00998 725 ProSitePatterns Protein kinases ATP-binding region signature. 397 420 IPR017441 GO:0005524
Trre1g00998 725 ProSitePatterns Calcium-binding EGF-like domain signature. 268 294 IPR018097 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00998 Trre-Chr1 7509130 7511550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00998 19 725 Receptor kinase-like Gene Family AT1G21230 45.130 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00998 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00998 - - gmx:100781051 934.095