Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00997 ATGAAACAGAACACAAAGCTCACACAATTATGCACAATTTTAATCATTACAGTATCCATGGTAACAACAACATTTGCATCAAATGAATCATCTTCTACATCCCTACCCGGTTGCAAAAACAAATGTGGAAATGTCACAATTCCATATCCATTTGGAATATCAGAATCATCAATACCAAATCAAGGAACCTGTTACCTAGAGTCCAAATTTGAACTCAAATGTGAAAATGACACAAAATTAATTTGGGGCGATATGCAAGTTTACAACATAAACATTCTCGAAGGTGAACTAGAATTGACAACTTTTGTCTCCGGTTATTGTAATAGCACACATTCCAATCAACCCACTTTACAGTTAAGTAGTTCCGGTTTCAGCGTATCAAGCACGGAAAACAAGTTCATAACGGTTGGTTGTGACACTTACGGTTTTATTGATAGCATTGACAACAATGAAACATATACAACAGGTTGCTTAACAAGATGTAACGGTAATCGGAACAAAATTGAAAACGGAACATGTTCGGGTATTGGTTGTTGTCAAGCTGAGATTCCAAATATGATGAGGAATATAAGTGTAAATGTTTTCGAATTTCCTAATTCTACGGAATCTTATGGATGTAGCTATTCTTTTGTTGTTAAAGATGGATCGTATAACTTTTCAGTTTCTCATTTGGATTATTTTCCTTATGACAAGCTTCCATTGATACTTGATTGGAGTGTGGCAAAAAGTTGTAAGGAAGATGATTATGCTTGCAGGAAGAATAGCGATTGTGTTGATGTGGACAATATTGGTTTTGGTTATCATTGTAAATGTAAAGAAGGTTATGAAGGAAACCCTTATCATCCAGATGGCTGCATAGATATCGACGAATGTAAGACATTAAATAACACATGCATAAGTGAAAAACATTGTCGCAACACCATAGGGAGTTACGAATGCTTTTGTCCAGATGGACAATCTGGGAATGGAACATTGGAGGGAGGGTGTAATAGACGAGATCTTATAACCAAGATTGCGATTGGAACAAGTGCTGGACTCATTCTCCTATTTGTGGCGATTTCAATTCTATACTTGACATACCAAAAAAGGAAACTCATTAAACTAAAGCAAAAATTCTTTCAACAAAATGGTGGATCTATTTTGCTACAACAACTATCTACAAGGGATGACACATCGCAATCAGCTCAAATATTCACGGAAGAGGAACTTAAGAAAGCAACCAAAAACTACGATGAAAGCTTAATTATCGGTAGAGGGGGTTTTGGCACAGTTTTCAAAGGGATTTTACCTGACAACAAAATTGTCGCTGTAAAAAAATCCAAAATAATTGATGCGGATCAAATTGAGCAATTTATTAACGAGGTAGTTGTTTTGTCCCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGTTTAGAGACAGAAGTTCCTTCCTTGGTTTACGAATTCGTTAGCAATGGTACACTTTTCGACTTCATACAAAGTACTAAAGATAAAGCAAATAATCCAACATGGAAAACACGTTTAAGGATAGCTGCTGAGACAGCTGGAGCTTTATCGTATCTACATTCAGCAGCGTCAATACCAATTATTCATAGAGATGTTAAGAGTACCAACATTCTCTTGGATGAAAATTACACTGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTTCCACTCGACCAAACCGAGATAGCAACAATGGTGCAAGGAACTCTAGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACCGAGAAAAGTGATGTTTATAGCTTTGGCGTAGTTATTGCAGAGCTTTTAACCGGAGACAAACCTCTTACTTTTAATAGGCCGGAAGAGAGCATTAGTCTTTCTATGCACTTTTTGTCTTGTTTGAAACAAGATAAAATATTTGAAGCTATTCAAGTTGGAGTTTTGAGTGATGATAACAAGAAAGAGATTAAGGAAGTTGCAATTCTTGCAGCAAGGTGTATGAGACTTAGAGGTGAAGAAAGACCGAGTATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGGTTAATGGAGAAGCATCCTTGGAATGATACAGAACAAAATTTTGAGGAGAATCAACGCTTGCTTCATGAGGCATCTTGTAGCATTTATAATGAAACTGGTGATAGCTATAATCCAGGACATACCATTGGGTATGATAGCTTGAGGGATCAACCATTAATTCCCTTGGATGATGGAAGATGA 2235 0.3655 MKQNTKLTQLCTILIITVSMVTTTFASNESSSTSLPGCKNKCGNVTIPYPFGISESSIPNQGTCYLESKFELKCENDTKLIWGDMQVYNINILEGELELTTFVSGYCNSTHSNQPTLQLSSSGFSVSSTENKFITVGCDTYGFIDSIDNNETYTTGCLTRCNGNRNKIENGTCSGIGCCQAEIPNMMRNISVNVFEFPNSTESYGCSYSFVVKDGSYNFSVSHLDYFPYDKLPLILDWSVAKSCKEDDYACRKNSDCVDVDNIGFGYHCKCKEGYEGNPYHPDGCIDIDECKTLNNTCISEKHCRNTIGSYECFCPDGQSGNGTLEGGCNRRDLITKIAIGTSAGLILLFVAISILYLTYQKRKLIKLKQKFFQQNGGSILLQQLSTRDDTSQSAQIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKIIDADQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFIQSTKDKANNPTWKTRLRIAAETAGALSYLHSAASIPIIHRDVKSTNILLDENYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVIAELLTGDKPLTFNRPEESISLSMHFLSCLKQDKIFEAIQVGVLSDDNKKEIKEVAILAARCMRLRGEERPSMKEVAMELDGIRLMEKHPWNDTEQNFEENQRLLHEASCSIYNETGDSYNPGHTIGYDSLRDQPLIPLDDGR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00997 744 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 304 315 IPR000152 -
Trre1g00997 744 CDD EGF_CA 287 321 - -
Trre1g00997 744 FunFam Wall-associated receptor kinase 2 486 704 - -
Trre1g00997 744 FunFam Wall-associated receptor kinase 2 380 485 - -
Trre1g00997 744 SMART serkin_6 410 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00997 744 Pfam Calcium-binding EGF domain 287 329 IPR001881 GO:0005509
Trre1g00997 744 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Trre1g00997 744 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Trre1g00997 744 Pfam Protein kinase domain 412 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00997 744 ProSiteProfiles EGF-like domain profile. 287 325 IPR000742 -
Trre1g00997 744 Pfam Wall-associated kinase 171 272 IPR013695 GO:0004674|GO:0016020
Trre1g00997 744 FunFam Wall-associated receptor kinase 2 288 329 - -
Trre1g00997 744 SUPERFAMILY EGF/Laminin 287 322 - -
Trre1g00997 744 Gene3D Laminin 241 327 - -
Trre1g00997 744 SMART egf_5 243 286 IPR000742 -
Trre1g00997 744 SMART egf_5 290 330 IPR000742 -
Trre1g00997 744 ProSitePatterns Calcium-binding EGF-like domain signature. 287 313 IPR018097 GO:0005509
Trre1g00997 744 Gene3D Transferase(Phosphotransferase) domain 1 486 709 - -
Trre1g00997 744 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 693 IPR045274 GO:0007166
Trre1g00997 744 SMART egfca_6 287 330 IPR001881 GO:0005509
Trre1g00997 744 CDD STKc_IRAK 416 684 - -
Trre1g00997 744 Gene3D Phosphorylase Kinase; domain 1 377 485 - -
Trre1g00997 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Trre1g00997 744 Pfam Wall-associated receptor kinase galacturonan-binding 38 97 IPR025287 GO:0030247
Trre1g00997 744 ProSiteProfiles Protein kinase domain profile. 410 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00997 Trre-Chr1 7509130 7511607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00997 38 744 Receptor kinase-like Gene Family AT1G21230 45.130 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00997 Pkinase 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00997 - - gmx:100781051 938.717