Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00995 ATGACACAGAATACAAAGCTCACCAAACTATGTCAAATCCAAATTTTATTAGTAACAATATTATTTGCATTGCATGAATCCTTTTCTACATCCCTACCCGGTTGCAAATCCACATGTGGAGATGTCATAGTTCCATATCCATTTGGTATATCAAATTCATCAATACCAAATCAAGGAACTTGTTTTCTAGAGCCCAAATTTGAACTCACATGTAAAAATGACACTGAATTACTTTTGGGCAATATACAAGTTAACAATATAACAATCCTCGAAGGTCAACTCGAAGTGACAACTTCGGTTTCGCGTTATTGTAATGACTCGAATTTCAATCAACCCACTTTGAAGTTAAATCGTGTCGGATTCAGCGTATCAAGCTCCGAAAACAAGTTCATAACGGTTGGTTGTGACACTTTTGGTTATATCGATAGCGTCTTCAACAATGAAAAATATACAACGGGTTGCTTAACAAGATGCAACGGTAATCGGAATAGAATTGAAAACGGAACATGTTCGGGTATCGGTTGTTGTCAAGTTGATATTCCAGATATGATGAGGAATATAAGTAAACATGTTTTTGATTTTCCTAATTCTACAGAATCTTTTGGATGTAGCTATTCTTTTATTGTTAAAGATGGATATTATAATTTTTCAGTTTCTCATTTGGATTATTTTCCTTATACGGAGCTTCCATTGATTATTGATTGGAATGTTGGAAGTAAAAATTGTAAGGCTTCAAAGGGTGAAGATGATTATGCTTGCAAGAAAAATAGTGATTGTTTTGATGAGGAAATTGATATTGGTTATCAATGTAAATGTAAGGAAGGTTATGAAGGAAATCCGTATCATCCAGATGGCTGCATAGACATTGACGAATGTAAGACATCGAATAACACATGTATGAGTGAAAAACATTGTCGCAACACAGACGGATATTATGAATGTTTTTGTCCTGATGGACAATCTGGAAATGGGACATTGGCAGATGGGTGTCACAAACAAGATTTAACTACCAAGGTTGCTATTGGATCAAGTGCTGGTCTCATTCTGCTATTTTTGGTGATTTCAATTCTACACTTGACATACCATAAAAGGAAACTCATTAAACTAAAGCGAAAATTCTTTCAACAAAATGGTGGTTCCATTTTGCTACAACAATTATCTACAAGAGAAGACTCGTCGCAATCAGCTCAAATATTCACGGAAGAGGAGCTTAAAAAAGCCACCAAAAACTACGATGAAAGCTTAATCATCGGTAGAGGAGGTTTTGGTACAGTCTTCAAAGGAATTTTACCTGACAATAAAATTGTTGCAGTAAAAAAATCTAAAGTAATAGACGCAAATCAAATTGAGCAATTCATTAACGAGGTAGTTGTTCTGTCCCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGTTTAGAGACAGAAGTTCCTTCCTTGGTTTACGAATTTGTTAGCAATGGTACACTTTTCGACTTCATACAAAGTACTAAAGATAGAGCAAATAATCCAACATGGAAAACGCGTTTAAGGATAGCAGCAGAAACAGCTGGAGCTTTGTCGTACCTACATTCATCTGCATCAATACCAATTATTCATAGAGATGTTAAGAGTACCAACATTCTCTTGGATGACAACTACACCGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTAGTTCCACTTGATCAAACTGAGATAGCGACAATGGTTCAAGGAACTCTTGGATACTTAGATCCGGAGTATATGCAAACACATCAATTAACCGAAAAAAGTGATGTTTATAGCTTTGGCGTAGTTCTTGCCGAGCTTTTAACAGGGGATAAACCTCTTTCTTTTAATAGGCCGGAAGAGAGCATTAGTCTTGCTATGCACTTTTTGTCGTGTTTAAAACAAGATCGAATTTTCGAAGCTGTTCAAGTTGGTATTTTGAATGATGAAAACAAGAAAGAGATTAAAGAAGTTGCTATTCTTGCAGCAAGGTGTTTGAGACTTAGAGGTGATGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAAGGTATAAGGTTAACTGAGAGGCATCCTTGGATTGAGACAGAGCAAAATTCTAATGAGGGTCAAAGCTTACTACATGAAGCATTTTCTAGCATTTATAATGAAATTGGTGATCATAGCTATAATGTTGGATATACTACCGGTTATGATAGCTTGAGAGATCAACCATTGATTGTTTTGGATGATGGAAGATGA 2241 0.3588 MTQNTKLTKLCQIQILLVTILFALHESFSTSLPGCKSTCGDVIVPYPFGISNSSIPNQGTCFLEPKFELTCKNDTELLLGNIQVNNITILEGQLEVTTSVSRYCNDSNFNQPTLKLNRVGFSVSSSENKFITVGCDTFGYIDSVFNNEKYTTGCLTRCNGNRNRIENGTCSGIGCCQVDIPDMMRNISKHVFDFPNSTESFGCSYSFIVKDGYYNFSVSHLDYFPYTELPLIIDWNVGSKNCKASKGEDDYACKKNSDCFDEEIDIGYQCKCKEGYEGNPYHPDGCIDIDECKTSNNTCMSEKHCRNTDGYYECFCPDGQSGNGTLADGCHKQDLTTKVAIGSSAGLILLFLVISILHLTYHKRKLIKLKRKFFQQNGGSILLQQLSTREDSSQSAQIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIVAVKKSKVIDANQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFIQSTKDRANNPTWKTRLRIAAETAGALSYLHSSASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPLSFNRPEESISLAMHFLSCLKQDRIFEAVQVGILNDENKKEIKEVAILAARCLRLRGDERPSMKEVAMELEGIRLTERHPWIETEQNSNEGQSLLHEAFSSIYNEIGDHSYNVGYTTGYDSLRDQPLIVLDDGR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00995 746 Gene3D Laminin 239 330 - -
Trre1g00995 746 Gene3D Phosphorylase Kinase; domain 1 378 486 - -
Trre1g00995 746 SUPERFAMILY EGF/Laminin 288 323 - -
Trre1g00995 746 FunFam Wall-associated receptor kinase 2 381 486 - -
Trre1g00995 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Trre1g00995 746 Pfam Calcium-binding EGF domain 288 327 IPR001881 GO:0005509
Trre1g00995 746 Pfam Protein kinase domain 413 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00995 746 Pfam Wall-associated receptor kinase galacturonan-binding 35 94 IPR025287 GO:0030247
Trre1g00995 746 ProSitePatterns Calcium-binding EGF-like domain signature. 288 314 IPR018097 GO:0005509
Trre1g00995 746 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Trre1g00995 746 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 695 IPR045274 GO:0007166
Trre1g00995 746 ProSiteProfiles Protein kinase domain profile. 411 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00995 746 Gene3D Transferase(Phosphotransferase) domain 1 487 708 - -
Trre1g00995 746 FunFam Wall-associated receptor kinase 2 487 705 - -
Trre1g00995 746 CDD EGF_CA 288 322 - -
Trre1g00995 746 CDD STKc_IRAK 417 685 - -
Trre1g00995 746 SMART egfca_6 288 331 IPR001881 GO:0005509
Trre1g00995 746 SUPERFAMILY Protein kinase-like (PK-like) 392 683 IPR011009 -
Trre1g00995 746 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Trre1g00995 746 SMART serkin_6 411 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g00995 746 SMART egf_5 241 287 IPR000742 -
Trre1g00995 746 SMART egf_5 291 331 IPR000742 -
Trre1g00995 746 ProSiteProfiles EGF-like domain profile. 288 331 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00995 Trre-Chr1 7499926 7503081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00995 15 746 Receptor kinase-like Gene Family AT1G21230 45.166 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre1g00995 Pkinase 7.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00995 - - gmx:100781051 957.977